BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473354 Length=1261 Score E Sequences producing significant alignments: (Bits) Value AT5G45410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1823 0.0 > AT5G45410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18401908-18403800 REVERSE LENGTH=1272 Length=1272 Score = 1823 bits (987), Expect = 0.0 Identities = 1126/1192 (94%), Gaps = 13/1192 (1%) Strand=Plus/Plus Query 71 TGTCCCTTTGTTGCTGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 130 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93 TGTCCCTTTGCTGCCGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 152 Query 131 CCTACCAATTTGTCCTTCTCCTCCTTGAGTCTTCCAATTCCGGTGCAAGGAGGTAAAGGT 190 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 153 CCTACCAATTTGTCCTTCTCCTCCTTGAGTTTTCCAATTCCGGTGCAAGGAGGTAAAGGT 212 Query 191 CCGATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTTTTCCATGGAAAAGAT 250 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 213 CCTATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTCTTCCATGGGAAAGAT 272 Query 251 GGTATTGTGCCGCTTTCTGGACATTCTAGTTTCCGAGATGATTTTGAAGATGAGGTGGCT 310 |||||||||||||||||||| || | | | ||||||| ||||||||||| || | Sbjct 273 GGTATTGTGCCGCTTTCTGG---TT-TCG----C-TGATGATTCTGAAGATGAGGCGGGT 323 Query 311 CGTCGTGCTCCTCTGCAATTCAATCCACTTGCGGGGAAGGTAGCTACTATAAGCCTATCA 370 ||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 324 CGTCGTG---CTCTGCAATTCAATCCACTTGCTGGTAAGGTAGCTACAATAAGCCTATCA 380 Query 371 GCTTTTGGTCCTGGAGGGCCTTTTGGCTTTGGTCCTTTCTCTGAGAAATGGAAGAAACAA 430 ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| Sbjct 381 GCTTTTGGTCCTGGAGGCCCTTTTGGTTTTGGTCCTTTCTCAGAGAAATGGAAGAAACAA 440 Query 431 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 500 Query 491 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 560 Query 551 AGCAAAGTCATGCCTCTTGTTTCTAAAGCATTAACGCTACCATCTGGTATGAAATATAGA 610 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 561 AGCAAAGTCATGCCTCTTATTTCTAAAGCATTAACGCTACCACCTGGTATGAAATATAGA 620 Query 611 TGTCCAGCTCCTATAGTAGCTGCAAGAGCTGCACTTTCAAAGACTGCTTTGGTTAAAAGT 670 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 621 TGTCCAGCTCCTATAGTAGCTGCTAGAGCTGCACTTTCGAAGACTGCTTTGGTCAAAAGT 680 Query 671 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 740 Query 731 AATGTGCCTCTTGGTGTATGGAGAGAACACACCAAGAAGTTTTCGCCTTCATGGTTTGTG 790 ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 741 AATGTGCCTCTAGGTGTATGGAGAGAACACACAAAGAAGTTTTCGCCTGCATGGTTTTTG 800 Query 791 GCGGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTACTGATGCCGAAA 850 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 801 GCTGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTTCTGATGCCCAAA 860 Query 851 ACAGCCATGGCTTTGACCATTGGAGCTTCGATTTTAGGACAGGTGATTGGGTCAAGAGCT 910 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 861 ACAGCCATGGCTTTGACCATTGGAGCTTCGATCTTGGGACAGGTGATTGGGTCAAGAGCT 920 Query 911 GAGCGTTACCGTCTCAGAGCAGTGGCTGAGAAAATGGTTACTGAAACCGCTATGGTTTCT 970 |||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||| Sbjct 921 GAGCGTTACCGTCTCAAAGCAGTAGCTGAGAAAATGGTTCCTGTAACCGCTATGGTTTCT 980 Query 971 GAATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTACAGGAGAG 1030 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 981 GGATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTATAGGGGAG 1040 Query 1031 GGAGTGAAGGAGGTTTATTTCAATGTAAATGTTGGAGAATCTGCTAAATCAACTGGACTC 1090 ||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 1041 GGAGTGAAGCAGGTTTATTACAATGTAAATATTGGAGAGTCTGCTAAATCAACTGGACTC 1100 Query 1091 TGTTATTGAGAGAAAGTTCTTATTGATTCCAAAAACTACAAATTACTATGTAAGGATTGG 1150 |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1101 TGTTATTGAGAGAATGTTCTTATTGATTTCAGAAACTACAAATTACTATGTAAGGATTGG 1160 Query 1151 ATGTTTGTGTGAGAGGGAAGGTTTCTGTAATTCAGTGAATTGTGTAAACCAAAACAGTGG 1210 || |||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||| Sbjct 1161 ATATTTGTGTGTGAGGGAAGGTTTTTGTAATTCAGTGAATTGTGTAAACCATAACAATGG 1220 Query 1211 TGTCGTTTTATCCCTTTTAA-TGGGTCTAAATAAAAGTTTAATAATTCCCTC 1261 |||||||||||||||| || |||||||||||||||| |||||||||||||| Sbjct 1221 TGTCGTTTTATCCCTTCAAAATGGGTCTAAATAAAAGGTTAATAATTCCCTC 1272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61997673075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5