BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473384 Length=842 Score E Sequences producing significant alignments: (Bits) Value AT1G31940.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 1014 0.0 > AT1G31940.1 | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470056-11471340 REVERSE LENGTH=900 Length=900 Score = 1014 bits (549), Expect = 0.0 Identities = 648/696 (93%), Gaps = 6/696 (1%) Strand=Plus/Plus Query 152 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCAGC-CATCGACGAACACAAAG 210 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 187 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCA-CTCATCGACGAACACAAAG 245 Query 211 TGCAATCGATGATAAGGAAGTGTTGGCTCCAAATTCTGATGTTGTTGCAGCAACTACCAC 270 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 246 TGCAATCGATGATAAGGAAGTATTGGCTCCAAATTCTGATGTTATTGCAGCAACCACCAC 305 Query 271 AACTGCAACAACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 330 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 AACTGCAACTACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 365 Query 331 TCCGGTCGAGCCTTTGGATAACGATTTACCGATTCAGTGTCCATTGCCTGAACCATCCAT 390 |||||||||||| || || |||||| ||||||||||||||||||| |||||||||||||| Sbjct 366 TCCGGTCGAGCCGTTAGACAACGATCTACCGATTCAGTGTCCATTACCTGAACCATCCAT 425 Query 391 TCTTAATGATGGAAGAATCTGGAAGGAGAGAGTATCGGCGTCTATGATGAGAAAAGGTGA 450 ||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 426 TCTAAATGATGGGAGAATCTGGAAGGAGAGAGTATCAGCGTCTATGAGGAGAAAAGGTGA 485 Query 451 TTCGCAGATTGCGAAAGATGAGGCTGCTTCTGAGTCTGATGGATCCGCACCAAAACCGCC 510 || |||||||| |||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 486 TTTGCAGATTGTGAAAGATGAGGCTGCTTCTGAGTCTGATGGCTCAGCACCGAAACCGCC 545 Query 511 TCGCCCGCCTCTGCCAAACCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 570 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 546 TCGCCCGCCTCAGCCAAATCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 605 Query 571 GCTAAATCTACTAGAAGAATGCAGCGCGATGCCGCCGGTAACATCTAAGAATGGATGAAC 630 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 606 GCTAAATCTACTAGAAGAATGCAATGCGATGCCACCGGTAACATCTAAGAATGGATGAAC 665 Query 631 AAAGTTCCTTAAACTCGATATATATTACACCGATACAAGCTTGTTCCTCAAAACAACTCT 690 |||||| |||||||||||||| ||| ||||||||||||| |||||||| | ||| ||||| Sbjct 666 AAAGTTGCTTAAACTCGATATTTATCACACCGATACAAGATTGTTCCTTACAACCACTCT 725 Query 691 TGAATCTCTGTTTTTCATTGTTTACGATTTT-ACTTATGTGTGTGCCAGAACAAAACTAA 749 |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || Sbjct 726 CGAATCTTTGTTTTTCGTTGTTTACGATTTTTACTTATGTGTGTGCCAGAACAAAACCAA 785 Query 750 ATCATAGTGTATGTtatatatattatataGGCAACTAAGGTTCATTAAGCTTATGCTCTA 809 |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||| Sbjct 786 ATCATAGTGTATGTTATATAGATTATACAGGCAACTAAAATTCATTAAGCTTCTGCTCTA 845 Query 810 TATATCTCAACA-C-CGA-TATTCTACAATGGAAGT 842 | || ||||||| | | | ||||||||||||||||| Sbjct 846 TGTACCTCAACAACACCAATATTCTACAATGGAAGT 881 Score = 132 bits (71), Expect = 6e-30 Identities = 123/145 (85%), Gaps = 15/145 (10%) Strand=Plus/Plus Query 1 AAACCAAAAAGCATTTATCATCCATTCATTCACCAAGTTCCTTTGAAGATATAAAGCAA- 59 ||| |||||||||||||||||||||||||| | | || || ||||||||||||| Sbjct 1 AAATCAAAAAGCATTTATCATCCATTCATT---C-A---CC--TGGAGATATAAAGCAAC 51 Query 60 CGT-TC-TTTT-TAAGTGGTTGAAGATAAATTTCTC-TTT-TGTTTCTTCGTCTTCTTCA 114 | | || |||| ||||||| | ||| |||||||||| ||| ||||||||||||||||||| Sbjct 52 CTTCTCTTTTTCTAAGTGGCTCAAGTTAAATTTCTCTTTTGTGTTTCTTCGTCTTCTTCA 111 Query 115 TACAAAGTCAAGAATCAAAATCAAG 139 |||||||||||||||||||| |||| Sbjct 112 TACAAAGTCAAGAATCAAAACCAAG 136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41041298099 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5