BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473390 Length=881 Score E Sequences producing significant alignments: (Bits) Value AT1G32070.2 | Symbols: ATNSI, NSI | nuclear shuttle interacting... 1358 0.0 > AT1G32070.2 | Symbols: ATNSI, NSI | nuclear shuttle interacting | chr1:11534684-11536338 REVERSE LENGTH=993 Length=993 Score = 1358 bits (735), Expect = 0.0 Identities = 838/887 (94%), Gaps = 10/887 (1%) Strand=Plus/Plus Query 1 ATTTCTTCTACTCTCAACTCTCAACCACAAAACC-a-aaaaaaTGCTACTAATTCCAATt 58 ||||||||||||||||| ||||||||||| |||| | |||||||||||||||| |||||| Sbjct 8 ATTTCTTCTACTCTCAAGTCTCAACCACATAACCAATAAAAAATGCTACTAATCCCAATT 67 Query 59 tcttcttcttcttcttcctcttcctctatccttcctcctAACTCATATTCATCGAATCAT 118 ||||||||||| ||||| || | | || || ||||||||| |||||| ||||||||||| Sbjct 68 TCTTCTTCTTCGTCTTCGTC-T-AT-TAGCCCTCCTCCTAATTCATATCCATCGAATCAT 124 Query 119 CACTCTCTGTTTTTCTCCAATCTCACATACCCGATTCCACATGGAAGCAGAAAGTTGAAG 178 |||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||| Sbjct 125 CACTCTCTGTTTTTCTCCAATCTCACATTCCCAATTCAACATGGAAGTAGAAAGTTGAAG 184 Query 179 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATTCGATCTGGGTTTGTGAAGAATAAT 238 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 185 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATCCGATCTGGGTTTGTGAAGAATAAT 244 Query 239 AATAGTACCCAACTTGTTGAACCACCTTCTATAGT---TGAAGAAGAAGAAGAGACTGAA 295 |||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| Sbjct 245 AATAGTACGCAACTTGTGGAACCACCTTCTATAGTCAATGATGAAGAAGAAGAGACTGAG 304 Query 296 CCATTATTGCCTGTGGAATTTGCTTTAGTTGAGAGAAATCTTGAAGATGGTTTAATTGAA 355 ||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 305 CCATTGTTACCTGTGGAATTTACTTTAGTTGAGAGAAATCTTGAAGATGGTTTAGTTGAA 364 Query 356 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAC 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAT 424 Query 416 AAGGTGGGATGGCCACGGAGACCGTTAGTGAAACTAGCTGCAGCTTTGAAGAATAGTTAT 475 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 425 AAGGTGGGATGGCCAAGGAGACCGTTAGTGAAACTAGCTGCTGCTTTGAAGAATAGTTAT 484 Query 476 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 544 Query 536 GGTAATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCAACGTCGGAT 595 || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 545 GGGGATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCGACGTCGGAT 604 Query 596 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 664 Query 656 CTAGGTAAAGCGCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAGAGAGATATTGGTAAT 715 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 665 CTAGGTAAAGCTCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAAAGAGATATTGGTAAC 724 Query 716 ATATCTCTATTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 775 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 ATATCTCTGTTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 784 Query 776 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGTTACTTGGTGATTACAAG 835 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 785 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGT-ACTTGGTGATTGCAAG 843 Query 836 AGAATGGGATTATTATTTGTTTGTATA-TTTCTGTGCTTTCTTATAT 881 | ||||||||| ||| |||| |||||| ||||| ||||||||||||| Sbjct 844 AAAATGGGATTGTTACTTGTATGTATAATTTCTTTGCTTTCTTATAT 890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43000429832 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5