BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473391 Length=1795 Score E Sequences producing significant alignments: (Bits) Value AT1G32080.1 | Symbols: | membrane protein, putative | chr1:115... 2789 0.0 > AT1G32080.1 | Symbols: | membrane protein, putative | chr1:11537342-11539800 REVERSE LENGTH=1813 Length=1813 Score = 2789 bits (1510), Expect = 0.0 Identities = 1716/1814 (95%), Gaps = 20/1814 (1%) Strand=Plus/Plus Query 1 GTGCCGTCTCTCAGAATCGTATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60 ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGCCGTCTCTTAGAATCACATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60 Query 61 CCACTCCTCTCTTCTCTCCTTTAGCTTTTTCTCCGGCAAGGAACCACCTTTCTTGCTCCA 120 |||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||| | Sbjct 61 CCACTCCTATCTTCTCTCCTTTAGCTTCTTCTCCAGCAAGGAACCGTCTTTCTTGCTCTA 120 Query 121 AGATCCGTTTCGATTCGAAACATGGGAGAATTCTCAATTCTAATGGTGCCCAGAAGTTGA 180 |||||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||| Sbjct 121 AGATCCGTTTCGGTTCCAAAAATGGGAAAATTCTCAATTCTGATGGTGCCCAGAAGTTGA 180 Query 181 A--TCTC-----T-C--AAA----A----CAAAGATTTCTACAAATGGGTTCTTCCAAAG 222 | |||| | | ||| | |||||||||||||||||||||||||| |||| Sbjct 181 ATCTCTCAAAATTCCGTAAACCCGATGGCCAAAGATTTCTACAAATGGGTTCTTCTAAAG 240 Query 223 AGATGACCTTTGAGAGAAAACTCTCAGTTCAAGCCATGGATGGTGCAGGAACAGGAAACC 282 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 241 AGATGAACTTTGAGAGAAAACTCTCAGTCCAAGCTATGGATGGTGCAGGAACAGGAAACA 300 Query 283 CATCAACTATCTCTCGTAACGTGTTTGCGATAAGTCACTTGTTGGTTTCACTTGGGATCA 342 ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 301 CATCAACGATCTCTCGTAACGTAATTGCGATAAGTCACTTGTTGGTATCACTTGGGATCA 360 Query 343 TACTTGCTGCTGACTATTTCTTGAAGCAGGCGTTTGTAGCTGCGTCTATTAAGTTCCCAA 402 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 TTCTTGCTGCAGACTATTTCTTGAAGCAGGCGTTTGTAGCAGCGTCTATTAAGTTCCCAA 420 Query 403 GTGCTTTGTTTGGGATGTTTTGTATCTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 462 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 421 GTGCTTTGTTTGGGATGTTCTGTATTTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 480 Query 463 CCGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATACAGAGAT 522 | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 481 CTGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATCCAAAGAT 540 Query 523 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTAGTTCTTCCTCTTTCTGTCAGAGATATTC 582 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 541 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTTGTTCTTCCTCTTTCTGTTAGAGATATTC 600 Query 583 CGGCTGCTTCCGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCTCTTT 642 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 601 CGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCACTTT 660 Query 643 GTGTAGCAGGGTTCACAGCAATTGCAGTGAGAAAAATGGTGAAAACCAAAATGACGGAAG 702 |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 661 GTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAG 720 Query 703 CCGAACCTATGGCGAAGCCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 762 |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCGAGCCTATGGCAAAACCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 780 Query 763 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 840 Query 823 GAACTTGTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTCGGTTCTGGGT 882 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 841 GAACTTCTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGGT 900 Query 883 TGCCATCTTCTATCAAGAAAGTTTTCCATCCGATAATCTGTTGCGCGTTATCAGCAGTAC 942 ||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct 901 TGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCTATCTGCAGTAC 960 Query 943 TCGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1002 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1020 Query 1003 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATATTAATGGGTTTTCTTGGCT 1062 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1021 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAATGGGTTTTCTTGGCT 1080 Query 1063 CTGTCATTCTGTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1122 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 CTGTCATTCTCTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1140 Query 1123 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCACTCTACTCCACTGCTC 1182 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1141 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCGCTCTACTCCACTGCTC 1200 Query 1183 TTGTTGGACGTTTAGTTGGTTTAGAACCATCTTTAACGGTTTCAATCCTACCTCGCTGCA 1242 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1201 TTGTTGGACGTTTAGTCGGTTTAGAACCTTCTTTAACGGTTTCAATCCTACCTCGCTGCA 1260 Query 1243 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1320 Query 1303 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACACGTTGTTCTTG 1362 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1321 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTG 1380 Query 1363 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1440 Query 1423 GACTCGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCACTTCCCTTCTGTGCAATAG 1482 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1441 GACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCTTCCCTTTTGTGCAATAG 1500 Query 1483 CTTATGCTCTCACCGGAATCTTCGGATCGTTACTGTGTTCTGTCCCTGCCGTCCGACAGA 1542 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1501 CTTATGCTCTTACCGGAATCTTCGGATCGTTACTGTGTTCTGTTCCTGCCGTCCGACAGA 1560 Query 1543 GTTTGCTTGCGGTCGTCGGCTGAGGATTGATGATGTGGCGTCACACAATTGATGGTCTCA 1602 ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 1561 GTTTGCTAGCGGTCGTCGGCTGAGGATTGATGATGTGGCGAAACACGATTGATGGTCTCA 1620 Query 1603 AAGCCGGAGAGTTACTTAAAATATG-GTAGCAGTTTGCTTTGGATGTAAAATAAGCTTGT 1661 |||| || ||||||||||||||||| | ||||||||||||||||||| |||||||||||| Sbjct 1621 AAGCTGGCGAGTTACTTAAAATATGAG-AGCAGTTTGCTTTGGATGTCAAATAAGCTTGT 1679 Query 1662 ATCAATGAAAAAGATGATGGAAAATGCttatttattttattttatatatataaatgtagt 1721 || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 1680 ATTAATGAAAAAGATGATGGAAAATGTTTATTTATTTTATTTTATATATGTAAATGTTGT 1739 Query 1722 gaaatttgtacaaaatatataaattttatttaAGAGTAGGATGCCCCAGCTTTCCAAATA 1781 || |||||||||| ||| ||||||||||| || |||||||||| |||||||||||||| | Sbjct 1740 GAGATTTGTACAACATACATAAATTTTATATAGGAGTAGGATGTCCCAGCTTTCCAAAAA 1799 Query 1782 TTTGGCACAAAGGT 1795 |||| ||||||||| Sbjct 1800 TTTGTCACAAAGGT 1813 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88804764105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5