BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473393
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32100.1 | Symbols: ATPRR1, PRR1 | pinoresinol reductase 1 |... 1548 0.0
> AT1G32100.1 | Symbols: ATPRR1, PRR1 | pinoresinol reductase 1
| chr1:11546338-11547994 REVERSE LENGTH=1129
Length=1129
Score = 1548 bits (838), Expect = 0.0
Identities = 1011/1089 (93%), Gaps = 33/1089 (3%)
Strand=Plus/Plus
Query 1 AAAAAATGGGAGAGGGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTGGGAGCGACTG 60
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 37 AAAAAATGGGAGAGAGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTTGGAGCGACTG 96
Query 61 GGTACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTATGTTT 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 97 GATACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTACGTTT 156
Query 121 TGCAGCGGCCAGAGATTGGTCTCGATGTCGAGAAAGTCCAACTCCTTCTCTCTTTCAAGA 180
||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 157 TGCAGAGGCCAGAGATTGGTCTCGAAATCGAGAAAGTCCAACTCTTTCTTTCTTTCAAGA 216
Query 181 AACTCGGCGCACGAATCGTTGAAGGTTCTTTCTCCGACCACCAAAGCCTCGTCTCTGCCG 240
||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 217 AACTCGGCGCACGTATCGTTGAAGGTTCTTTCTCCGACCATCAAAGCCTCGTATCCGCCG 276
Query 241 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGCGTTCACTTCCGTAGCCATAACA 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 277 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACA 336
Query 301 TCCTTGTTCAGCTCAAGCTTGTCGAAGCCATCAAAGAGGCTGGTAACGTCAAGCGGTTTT 360
| || || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 337 TTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGCGGTTTT 396
Query 361 TACCATCTGAATTTGGTATGGATCCACCGCGTATGGGACATGCGCTACCACCAGGAAGAG 420
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 397 TACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGCTACCGCCCGGAAGAG 456
Query 421 AAACCTTCGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCATACA 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 457 AAACCTTTGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCTTACA 516
Query 481 CTTACATTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTATCTCAGATGGTAA 540
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 517 CTTACGTTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAA 576
Query 541 CTTTACTTCCTCCCAAAGAAAAAGTTAATATTTATGGTGACGGAAATGTAAAAGTTGTGT 600
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 577 CTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGTGGTGT 636
Query 601 TCGCGGATGAAGATGATATCGCAAAATACACCGC-AAAGACGTTAAACGATCCGCGGACA 659
| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 637 TTGCGGATGAAGATGATATCGCAAAATACACCGCGAAA-ACGTTAAACGATCCACGGACA 695
Query 660 TTAAACAAAACCGTGAATATAAGACCTCCCGACAACGTTCTCACTCAGATGGAATTAGTT 719
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 696 TTAAACAAAACCGTGAATATTAGACCTCCCGACAACGTTCTCACGCAGTTGGAATTAGTT 755
Query 720 CAGATGTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCAGAAGAC 779
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 756 CAGATCTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCACAAGAC 815
Query 780 TTCCTTGCCAACATTGAACAAATGGAGATTCCACACCAAGCGGGGATAGGACATTTCTAT 839
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 816 TTCCTCGCCAACATTGAACAAATGGAGATTCCACACCAAGCAGGGATAGGACATTTCTAT 875
Query 840 CACATTTTCTACGAAGGATGTCTCACTGATCACGATGTCGGAGAAGACGAAGAAGCTTCT 899
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 876 CACATTTTCTATGAAGGATGTCTCACTGATCACGAAGTCGGAGAAGACGAAGAAGCTTCT 935
Query 900 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCT-T-- 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 936 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCTCTGA 995
Query 957 T---A--AA-T---A-CT---CG---TA----T--CAAAAGTTTGATGTTTTATATTCAT 994
| | || | | || | || | |||||||||||||||||||||||||
Sbjct 996 TTTGACCAAGTCTTATCTATACTAAATACACATATCAAAAGTTTGATGTTTTATATTCAT 1055
Query 995 AT-ATGTTCTGCTATA----CAAATTTAAAAATATATTCTTCATGTAATAAAAAATATTA 1049
| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 1056 -TCATGTTCTGCTATATATGCAAATTTAAAAATATATTCTTCATGCAAGAAAAAATATTA 1114
Query 1050 TCTTTTGTT 1058
||||| |||
Sbjct 1115 TCTTTGGTT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5