BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473413 Length=2534 Score E Sequences producing significant alignments: (Bits) Value AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prot... 3629 0.0 > AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11612118-11616218 FORWARD LENGTH=2582 Length=2582 Score = 3629 bits (1965), Expect = 0.0 Identities = 2271/2413 (94%), Gaps = 43/2413 (2%) Strand=Plus/Plus Query 144 TTTTCTGGTTAGCTTTTGCTTTTACAGAGATTATTACCCTTGTTGCCTCAGCGATCGATC 203 ||||||||| ||||||||||||| || |||||||||||||||| |||||||||| Sbjct 190 TTTTCTGGTCAGCTTTTGCTTTT----AG---ATTACCCTTGTTGCCT--GCGATCGATC 240 Query 204 TGaaaaaaaaGGAACGCCATCTTGCCGACGGCTGTTATATAAAAGACGGTGGCATTTCTT 263 |||||||| |||||| ||||||| ||||||||||||| ||||||| |||||||||||| Sbjct 241 TGAAAAAAGAGGAACTTTATCTTGCTGACGGCTGTTATA-AAAAGAC-GTGGCATTTCTT 298 Query 264 CTCTGATTGTGTTTATTTTTATGACGGAGAAGATGAACACACTTGTAATCTATCAGCCTC 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 299 CTCTGATTGTGTTTATTTTTATGACGGAGAAGATGAACACACTTGTAATCTATCAGACTC 358 Query 324 TAACTGTTACTGTTGGTGTTTTCTAATGCTGTCGGCAAGACACTATCTTTAGGAGTGCTA 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 359 TAACTGTTACTGTTGGTGTTTTCTAATGCTGTCGGCAAGACACTATCTTTAGGACTGCTA 418 Query 384 GGGAGTTTAGAGGTTACTCAGTTGACTTTTTCTTTCAAGGTTATAGGTTTAGTATTGTTA 443 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 419 GGGAGTTTAGAGGTTACACAGTTGACTTTTTCTATCAAGGTTATAGGTTTAGTATTGTTA 478 Query 444 ATATATAGAAATGGAAGCCAAGATCGTCAAGGTGTTGG---GTAGTAGGTGTGAAGATGG 500 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 479 ATATATAGAAATGGAAGCCAAGATCGTCAAGGTGTTGGATAGTAGTAGGTGTGAAGATGG 538 Query 501 ATTCGGGAAGAAGAGGAAGCGCGCAGCAAGCTATGCTGCATATGTTACTGGAGTTTCGTG 560 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 ATTCGGAAAAAAGAGGAAGCGCGCAGCAAGCTATGCTGCATATGTTACTGGAGTTTCGTG 598 Query 561 TGCAAAGCTGCAAAATGTGCCCCCACCGAACGGGCTGTGCCAAATTCCTGACAAAAGAAG 620 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 599 TGCAAAGCTGCAAAATGTGCCCCCACCGAACGGGCAGTGCCAAATTCCTGACAAAAGAAG 658 Query 621 AAGGCTGGAAGGTGAAAATAAGCTTAGCGCTTATGAGAATCGCTCTGGGAAGGCACTGGT 680 |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| Sbjct 659 AAGGCTGGAAGGTGAAAACAAGCTTAGCGCTTACGAGAATCGCTCTGGGAAGGCGCTGGT 718 Query 681 CAGATACTACACTTATTTTAAGAAGACGGGAATCGCTAAACGTGTTATGATCTACGAAAA 740 |||||| |||||||||||||||||||| ||||||||||||||||||||||| || || || Sbjct 719 CAGATATTACACTTATTTTAAGAAGACTGGAATCGCTAAACGTGTTATGATGTATGAGAA 778 Query 741 TGGTGAATGGAATGATTTGCCTGAGCATATTATATGCGCCATCCGGAATGAATTAGATGA 800 ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| || Sbjct 779 TGGCGAATGGAATGATTTGCCTGAGCACGTTATATGCGCCATCCAGAATGAATTAGAAGA 838 Query 801 AAAGAGAGCCGCAATTGAGTTCGAGTTGTGCGGTCACAATTTTATCTTGGACTTCTTGCA 860 |||||| ||||||||||||||| |||| |||||||||| |||||| |||||||||||||| Sbjct 839 AAAGAGCGCCGCAATTGAGTTCAAGTTATGCGGTCACAGTTTTATTTTGGACTTCTTGCA 898 Query 861 CATGCATAGACTAGACTTGGGAACAGGGGCAAAAACCCCACTAGCATGGATTGACATTGG 920 |||||| ||||||||| ||| |||||| ||||||||||| || ||||||||||||| || Sbjct 899 CATGCAAAGACTAGACATGGAAACAGGAGCAAAAACCCCTCTTGCATGGATTGACAATGC 958 Query 921 AGGCAAGTGTTTTTTCCCTGAAATTTACGAGAGTGATGAAAGGACCAATTGCTGCCATCA 980 ||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 959 AGGAAAGTGCTTTTTCCCTGAAATTTATGAGAGTGATGAAAGGACCAATTACTGCCATCA 1018 Query 981 TAACTTTGTGGAAGATCCAAAACAGAATGCTCCCCATGATATCAAACTGCGCCTTGAGAT 1040 ||| | ||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1019 TAAATGTGTGGAAGACCCAAAACAGAATGCTCCTCATGATATCAAACTTCGCCTAGAGAT 1078 Query 1041 TGACGTTAATGGTGGCGAGTCACCGAGGTTAAATTTGGAGGAGTGCAGTGATGAGTCTGG 1100 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TGATGTTAATGGTGGCGAGACACCGAGGTTAAATTTGGAGGAGTGCAGTGATGAGTCTGG 1138 Query 1101 TGAT-A-AT-ATGGACGATGTTCCCCTTGCTCAACGATCTTCAAATGAGCACTATGACGA 1157 |||| | || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1139 TGATAATATGATGGACGATGTTCCCCTTGCTCAACGATCTTCAAATGAGCACTAT---GA 1195 Query 1158 CGAGGCAACAGAGGATAGCTGCAGCCGCAAGCTTGAAGCTGCTGTTTCGAAATGGGATGA 1217 |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1196 CGAGGCTACGGAGGATAGCTGCAGCCGCAAGCTCGAAGCTGCTGTTTCGAAATGGGATGA 1255 Query 1218 GACTGATGCTATA---GTCTCTGGTGCCAAGCTTACTGGAACCGAAATACTTGATAAAGA 1274 ||||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||| Sbjct 1256 GACTGATGCTATAGTCGTCTCTGGTGCCAAGCTTACGGGAAGCGAAGTACTTGATAAAGA 1315 Query 1275 TGCAGTTaaaaaaaTGTTTGCTGTAGGCACAGCTTCTCTAGGACATGTAGCAGTACTGGA 1334 |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1316 TGCAGTAAAAAAAATGTTTGCTGTAGGCACAGCTTCTCTAGGACATGTACCAGTGCTGGA 1375 Query 1335 TGTGGGCCGTTTTTCCAGTGAGATTGCTGAAGCTCGTCTAGCACTTTTCCAGAAGCAGGT 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TGTGGGCCGTTTTTCCAGTGAGATTGCTGAAGCTCGTCTAGCACTTTTCCAGAAGCAGGT 1435 Query 1395 TGAGATAACTAAGAAACATCGAAGGGATGCAAACGTTAGGTATGCTTGGCTTCCTGCAAA 1454 |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1436 TGAGATCACTAAGAAACATCGAGGGGATGCAAACGTTAGGTATGCCTGGCTTCCTGCAAA 1495 Query 1455 GAGGGAAGTTTTATCAGCAGTTATGACGCAAGGACTTGGAGTTGGTGGAGCATTTATTAG 1514 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || Sbjct 1496 GAGGGAAGTTTTATCAGCAGTGATGATGCAAGGACTTGGAGTTGGTGGAGCATTTATCAG 1555 Query 1515 AAAGTCCATCTATGGTGTTGGAATCCATTTAACTGCTGCAGACTGCCCTTACTTCAGTGC 1574 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct 1556 AAAGTCCATCTATGGTGTTGGGATCCATTTAACCGCTGCAGACTGCCCTTATTTCAGTGC 1615 Query 1575 TAGATATTGTGATGTTGACGAAAATGGAGTTCGTTACATGGTTTTATGCCGTGTAATAAT 1634 |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || || Sbjct 1616 TAGATACTGTGATGTTGACGAAAACGGAGTACGTTACATGGTTTTATGCCGTGTGATTAT 1675 Query 1635 GGGGAATATGGAGCTTCTTCGTGGTGATAAGGCTCAGTTCTTTTCTGGTGGAGAAGAATA 1694 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1676 GGGGAATATGGAGCTTCTTCGTGGTGATAAAGCTCAGTTCTTTTCTGGTGGAGAAGAATA 1735 Query 1695 TGACAATGGAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATAT 1754 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1736 TGACAATGGAGTCGATGACATTGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATAT 1795 Query 1755 GAACACCCATATATTCCCGGAATTCGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGC 1814 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1796 GAACACACATATATTCCCGGAATTTGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGC 1855 Query 1815 TGAAGGTAATTTGATTGCTAAGCGTGATAACTCAGGGGTCACTTTGGAAGGACCTAAGAA 1874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1856 TGAAGGTAATTTGATTGCTAAGCGTGATAACTCAGGGGTCACTTTGGAAGGACCTAAGGA 1915 Query 1875 TCTTCCTCGTCAGTTGGAGTCAAACCATGGAGCAGGAGGTTCAGGAAGTGCAAACAGTGT 1934 |||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 1916 TCTTCCTCCTCAATTGGAGTCAAACCAGGGAGCAAGAGGTTCAGGAAGTGCAAACAGTGT 1975 Query 1935 TGGTTCAAGCACTACAAGACCCAAATCTCCATGGATGCCTTTTCCTACTCTGTTTGCAGC 1994 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1976 TGGTTCAAGCACTACAAGACCCAAATCTCCATGGATGCCATTTCCTACTCTGTTTGCAGC 2035 Query 1995 AATCTCACATAAGGTTGCAGAGAACGACATGTCGTTGATCAATGCTGACTACCAACAACT 2054 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2036 AATCTCACATAAGGTTGCAGAGAACGACATGTTGTTGATCAATGCTGACTACCAACAACT 2095 Query 2055 GAGGGATAAGAAGATGACGAGAGCAGAGTTTGTGAGGAAACTGCGGGTGATTGTAGGAGA 2114 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 2096 GAGGGATAAGAAGATGACGAGAGCGGAGTTTGTCAGGAAACTGCGGGTGATTGTAGGAGA 2155 Query 2115 TGATCTGCTAAGGTCCACCATAACAACGCTTCAAAACCAGCCAAAGTCGAAGGAGATTCC 2174 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2156 TGATCTGCTAAGGTCCACCATAACAACCCTTCAAAACCAGCCAAAGTCGAAGGAGATTCC 2215 Query 2175 AGGAAGCATCAGAGACCATGAAGAAGGTGCAGGTGGGTTGTT-GTAA-G---ATGATGAT 2229 |||||||||||||||||||||||||||||||||||| |||| |||| | |||||||| Sbjct 2216 AGGAAGCATCAGAGACCATGAAGAAGGTGCAGGTGGATTGTAAGTAAAGTGGATGATGAT 2275 Query 2230 GA---CGAATATCAAAAGGAAGCTGCTTTCTATCTATCTACCCGCcttttgtggttctcc 2286 || |||||||||||||||||||||||| |||||||||||| |||||| |||||||||| Sbjct 2276 GATGACGAATATCAAAAGGAAGCTGCTTTTTATCTATCTACCTGCCTTT-GTGGTTCTCC 2334 Query 2287 ttttgactttttctaattttagacttttggttttgGGTCGGGTCGTTGGTAGAGTTTAAA 2346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2335 TTTTGACTTTTTCTAATTTTAGACTTTTGGTTTTGGGTCGGGTCGTTGGTAGAGTTTAAA 2394 Query 2347 -TGTGTCGACTTTTCTTTCTGTCGTGAAAAATCGTACTATATTATACTATGATTCTACTT 2405 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 2395 ATGTGTCGACTTTTCTTTCTGTCGTGAAAAATCGTACTATATTATA-T--GATTCTACTT 2451 Query 2406 ATTAGTCAATGATGTCGCTGGGTCTTTGtttttttAGCTGCAA--AA--CATTGTTGTGG 2461 | ||||||||||||| ||||||||||||| ||||||||||| || ||||||||||| Sbjct 2452 A---GTCAATGATGTCGTTGGGTCTTTGTTTCTTTAGCTGCAAGCAAAACATTGTTGTGG 2508 Query 2462 AAGTCGTTGAATCTTGACGAAAATTTGGTCGTTGAGTCTATAGCGTGAAACTTCTCTTCA 2521 ||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||| Sbjct 2509 AAGTCGTTGAATCTTGACGAAAATTTGGTCGTTAAGCCTATCGCGTGAAACTTTTCTTCA 2568 Query 2522 CTATACTTTTTCT 2534 ||||||||||||| Sbjct 2569 CTATACTTTTTCT 2581 Score = 169 bits (91), Expect = 1e-40 Identities = 139/159 (87%), Gaps = 16/159 (10%) Strand=Plus/Plus Query 1 AAGCAAATTTTTGGTAAGAGAAAGAGG--AAAAACTCAGGAACCGCCGACTTAAGAGTTT 58 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1 AAGCAAATTTTTGGTTAGAGAAAGAGGAAAAAAACTCAGGAACCGCCGACTTAAGAATTT 60 Query 59 CTTC---ATC-TC-CA--AA-ATCGCCGATTATATATAAATGACTCTTCTTCTTCGATTC 110 |||| ||| || | || |||||||||||||||||||||||||||| ||||| Sbjct 61 CTTCTTCATCATCTCTCCAATATCGCCGATTATATATAAATGACTCTTC------GATTC 114 Query 111 AGTTTCTTCTTCGTCGTCATCGCCGGCTTAGGGTTTTCT 149 |||||||||||||||||||||||||||||||||||||| Sbjct 115 TGTTTCTTCTTCGTCGTCATCGCCGGCTTAGGGTTTTCT 153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125768526101 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5