BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473467
Length=3225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32810.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 2333 0.0
> AT1G32810.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:11881810-11885843 FORWARD LENGTH=3207
Length=3207
Score = 2333 bits (1263), Expect = 0.0
Identities = 1391/1451 (96%), Gaps = 15/1451 (1%)
Strand=Plus/Plus
Query 1781 GCTCGAAGCAACAACCA--TG-TGATGATGCTGATGCTAATACCAATGATGAGGACTGTG 1837
||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1766 GCTTGAAGCAACAACCAGGTGATGATGATAATGATGCTAATACCAATGATGAGGACTGTG 1825
Query 1838 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1885
Query 1898 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAATCGTACTTCCCATT 1957
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1886 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAACCGTACTTCCCATT 1945
Query 1958 CTTCAGTTTCCAAGACTAGAGAGTCTTCCTCTGCTTCAAAGACATCTTCAGCAGCTCGGA 2017
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1946 CTTCAGTTTCCAAGACAAGAGAGTCTTCCTCTTCTTCAAAGACATCTTCAGCAACTCGGA 2005
Query 2018 TTAACGGTGGTTCTTCCGAGGCTCCTAGTAAACATTCGCTTTCAGGGACCTTCCCGAAAA 2077
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2006 TTAATGGTGGTTCTTCTGAGGCTCCTAGTAAACATTCGCTTTCAGGAACCTTCCCGAAAA 2065
Query 2078 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAATCCTGTGCAGTCTATAA 2137
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2066 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAACCCTGTGCAGTCTATAA 2125
Query 2138 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2185
Query 2198 ATAGCTCTCCGCGAGTTCCTCGTGTACCACGCCTGAGACAGCCTGGTAGCTTGCCCCTGT 2257
|||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 2186 ATAGTTCTCCTCGAGTTCCTCGTGTCCCCCGCATGAGACAGCCTGGTAGCTTGCCCCTGT 2245
Query 2258 CTCCAACCGCTCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 CTCCAACCGCCCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2305
Query 2318 TTTCCAGAAGGAAAAACAAGGATGCATCCAAAGAAGGTTACCGCAATTTACGTGATGATG 2377
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2306 TTTCCAGAAGGAAAAACAAGGATACATCCAAAGAAGGTTACTGCAATTTACGTGATGATG 2365
Query 2378 ATAGATGCAGTACAAGGAGTGCCAAAACGCGTCGCTCTCCTGATAGGAGAACACAACAAG 2437
||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 2366 ATAGATGCAGTACAAGGAGTGCCAAAAATCGTCGGTCTCCTGATAGGAGGACACAACAAG 2425
Query 2438 ACAGTGGAAGCAGAGGGGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCCCCAAAA 2497
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2426 ACAGTGGAAGCAGAGGAGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCACCAAAA 2485
Query 2498 CCTCTTCTTACTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGGCTACAAGCACAAGCA 2557
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2486 CCTCTTCTTATTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGACTACAAGCACAAGCA 2545
Query 2558 GCGGACCGTGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2617
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 GCGGACCATGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2605
Query 2618 CTAGGAATAATGGCACTGCAGTACATCGAACTTTGCCAGGCTTAATCAATGAAATCATGA 2677
||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2606 CTAGGAATAATGGTACTCCAGTACATCGAACTTTGCCAGGATTAATCAATGAAATCATGA 2665
Query 2678 GCAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 ACAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2725
Query 2738 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2726 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2785
Query 2798 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAACT 2857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2786 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAATT 2845
Query 2858 CAGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGACTCAGATGAGAACGAAAGCA 2917
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2846 CCGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGATTCAGATGAGAACGAAAGCA 2905
Query 2918 GTAAGGGAGGAAGGAAGAGACTGCATCAACATCACTCTCAAGGAGAAGAATTTCCCaaag 2977
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2906 GTAAGGGAGGAAGGAAGCGACTGCATCAACATCACTCTCAAGGAGAAGAGTTTCCCAAAG 2965
Query 2978 gaaaaaggaaagcaagaaaacggagaaggctctctctccaaagaaaaggcattaaagTGT 3037
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 2966 GAAAAAGGAAAGCAAGAAAACGGAGAAGGCTTTCTATTCAAAGAAAAGGCATTAAAGTGT 3025
Query 3038 TGAGAAAAAAGAGAAACCAAGAAGAAGACGAGGTAAGCGAAGAAGACGAGGAAGGTGCGT 3097
||||||| ||||||||| |||||||| || || |||||||||||||||||| |||||
Sbjct 3026 TGAGAAAGAAGAGAAAC---GAAGAAGA--AGTTA-GCGAAGAAGACGAGGAAGATGCGT 3079
Query 3098 TCTCGGACACAAGTGAGGAGAGCATCTTCTGCga--a-gaagaagaagaagaagaagaGG 3154
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3080 TCTCGGACACAAGCGAGGAGAGCATCTTCTGCGATGAAGAAGAAGAAGAAGAAGAAGAGG 3139
Query 3155 GCCACACTACTGCTGCTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3214
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3140 GCCACACT---GCTACTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3196
Query 3215 CCACTTCATGA 3225
|||||||||||
Sbjct 3197 CCACTTCATGA 3207
Score = 1219 bits (660), Expect = 0.0
Identities = 876/974 (90%), Gaps = 40/974 (4%)
Strand=Plus/Plus
Query 1 ATGAGAGGAAGATCGTATCGGTTTTCGAGTACGGATCCTCATGAGGATTGGGGTAATGAA 60
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
Sbjct 1 ATGAAAGGAAGATCGTATCGGTTTTCAAGTACGGATCCTCATGAGGATTGGGTTGATGGA 60
Query 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120
Query 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTAAAGAAGAAGAG 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTGAAGGACAAGAG 180
Query 181 CTTTTTACTTGTGATAAGTGTAAGAGCAAGAACAATATTAACGATAGCGAGGAGACTGAG 240
|||||||||||| ||||||||||||||||||||||| |||| ||||| || |||||||||
Sbjct 181 CTTTTTACTTGTCATAAGTGTAAGAGCAAGAACAATGTTAATGATAGTGAAGAGACTGAG 240
Query 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAAACCTTGAGAATGGAGAATTCGTGTACT 300
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAGACTTTGGGAATGGAGAATTCGTGTACT 300
Query 301 CGGGGTGTTCCGC-CGAAGCGTCCTTTTAGGTTATGGACTGAGATCCCGACC-GAGGAAA 358
||| |||| || | |||||||||||||||||||||||||||||||| | | || ||||
Sbjct 301 CGGAGTGTACCTTTC-AAGCGTCCTTTTAGGTTATGGACTGAGATCCC-AGCTGAAGAAA 358
Query 359 AGGTTCATGTTCAAGGAATCCCGGGTGGGGATCCGGCTCTTTTCGAAGGGTTGTCGTCGG 418
|||||||||| |||||||||||||||||||||||| ||||||| || || ||||||||||
Sbjct 359 AGGTTCATGTGCAAGGAATCCCGGGTGGGGATCCGTCTCTTTTTGATGGATTGTCGTCGG 418
Query 419 TTTTCTCCCGGGAGCTGTGGAAGTGTACTGGTTATGTGCCGAAGAAGTTTAACTTTAAGT 478
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 419 TTTTCTCCCGGGAGCTGTGGAAGTGTAGTGGTTATGTGCCTAAGAAGTTTAACCTTAAGT 478
Query 479 ATAGAGAGTTTCCATGCTGGGATGAGCAAGAGAAGGATGAGATTGAAAATGACGGTGCAG 538
||||||||||||| |||||||||||||||||||||||||| | || ||||||||
Sbjct 479 ATAGAGAGTTTCCTTGCTGGGATGAGCAAGAGAAGGATGA-A--GA------CGGTGCAG 529
Query 539 GGGTTTTGTTTTCTATGTCCAAGGAAAATGTGATTGCTGCTCCTGTGAGTGCTTTGGTTG 598
||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||
Sbjct 530 GGGTTTTGTTTTCGATGTCGAAGGAGAATGTGATTGCTGCTCCTGTTAGTACTTTGGTTG 589
Query 599 GAATGA--AG-AGCCTAGATGGTAAAGGA--A-CCAATGATTTGAAGCTTGGTTGTGCAA 652
|||||| || || || |||||||||||| | ||||||| ||||||||||||||| |
Sbjct 590 GAATGAGGAGGAGTCTTGATGGTAAAGGAGGAACCAATGACGTGAAGCTTGGTTGTG-A- 647
Query 653 AAGACGGCAATAGTTGGGACTCTGGCGAAACAGATAGAAAACATTCTCAGGGTGCCATGA 712
| | | | | | | |||| ||||||||||||||||||||||| || |
Sbjct 648 ----CT-C--T-G--G----T--G---AAACGGATAGAAAACATTCTCAGGGTGCTATTA 688
Query 713 AGAAGAATAAGAGGTTGATTCGTCCTATGATCACGAATAAACGAAGAAAAGAATTGTTTG 772
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 689 AGAAGGATAAGAGGTTGCTTCGTCCTATGATGACGAATAAACGAAGAAAAGAATTGTTCG 748
Query 773 GAGCTTCaaaagagcggatgaagaagaaggctgaaggtgcagaaaaagaagaagatgata 832
| |||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||
Sbjct 749 GTGCTTCAAAAGAGCGGATGAAGAAGAAGGTTGAAGTTGTAGACAAAGAAGAAGATGATA 808
Query 833 agaaagGGTTTGTCGGTAAAACAGGAATTCGACCTGCCAGTGATTCTAAACCATCAGAAT 892
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 809 AGAAAGGTTTTGTCGGTAAAACAGGAAATCGACCTGCCAGTGATGCTAAACCATCAGAAT 868
Query 893 CTCGTAAGGACATAGAAGCAGAAGGTTTTACAAGCGACATTGGGATCACGAAGAGTGTAA 952
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 869 CTCGTAAGGACATAGAAGCAGAAGGTTTTACTAGCGACGTTGGGATCACGAAGAGTGTAA 928
Query 953 AGGCCAAGAAAGCT 966
||||||||||||||
Sbjct 929 AGGCCAAGAAAGCT 942
Score = 1122 bits (607), Expect = 0.0
Identities = 730/789 (93%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 996 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1001
Query 1056 AGAACAGAATCTTTCTGACGTTCATGCCAATGGTGCGGGAAAACAGGAAGAGAAAGCTGG 1115
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1002 AGAACAGAATCTTTCTGACGTTCATGCTAATGGTACTGGAAAACAGGAAGAGAAAGCTGG 1061
Query 1116 TCATCATTTTCGAATTGTGCTTAAGAGCTCTGCATCTACTGATCCTTCTGTCCTCGGAGG 1175
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1062 TCATCATTTCCGAATTGTGCTTAAAAGCTCTGCAACTACTGATCCTTCTGTCCTCGGAGG 1121
Query 1176 AAAAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACCGTAGCTGA 1235
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1122 AAGAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACAATAGCTGA 1181
Query 1236 CGTTCCGGAAGATAATGCAGTTGATTCTTCTGAAAGTTCCCGGAAGCCTTCTCCTGTTTC 1295
| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 1182 TGCTCCAGAAGATAATGCAGCTGATTCTTCTGAAAGTTCCCAGAAGCCTTCTCTTGGTTC 1241
Query 1296 CACGGTTGGTAAAACGCGAGAAGGTGAAGA-AAAAA---T-A-CA---CAGTGGGAAAGT 1346
|| |||||||||||| |||||||||||||| ||||| | | | ||| ||||| |
Sbjct 1242 CATGGTTGGTAAAACACGAGAAGGTGAAGAGAAAAATTGTGATGATGTTAGTAGGAAAAT 1301
Query 1347 CAGTTCTAGAAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTGT 1406
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1302 CAGTACGAGGAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTCT 1361
Query 1407 AGGCCTGCAGACTCTAGACCCTATGGATTCTAAAGTGTCAGGGAGCTCTGTATCTCAGAT 1466
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1362 AGGCCTGCAGACTCTAGACCATATGGATTCTAAAGTGTCAGGGAGCTCTGCGTCTCAGAT 1421
Query 1467 CTCTGGAGCTTCTGAACTTAACAAAATGACACCGGGCAGTTCACTTCCTGATGATCACAA 1526
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1422 CTCTGGAGGTTCTGAACTTAACAAAATGACACCGAGCAGTTCACTTCCTGATGATCACAA 1481
Query 1527 ACCGCAGCCTGTTGATGTGGTATCAGAAGGAATAAGTAGTGGCAATAGAAACAAAGCTAT 1586
||||||| ||||||| |||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 1482 ACCGCAGTCTGTTGAAATGGTATCAGAGGGAATAAGTAGTGGCAATAGAGACAGAGCTAT 1541
Query 1587 GGAATTAAAACGAGAACTGGTGGTTTCGGAAGCAGAAAAAGATATTCTGGAAACAAAGCC 1646
|||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||
Sbjct 1542 CGAATTAAAACGAGAACTGGTGGTTTCAGAAACTGAAAAAGATATTCAGGAAACAAAGCC 1601
Query 1647 TGAATCTGGTTTATTTCAAGAACCATCAAAGCCTTTCAGACCTATTCCCCACACTGTTTC 1706
|| ||||| |||||||||||| ||||||||||||| |||||||||||| || || |||||
Sbjct 1602 TGGATCTGTTTTATTTCAAGAGCCATCAAAGCCTTGCAGACCTATTCCGCATACGGTTTC 1661
Query 1707 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1721
Query 1767 AGAAAAGTC 1775
||||||||
Sbjct 1722 TGAAAAGTC 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160433883714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5