BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473502
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33270.1 | Symbols: | Acyl transferase/acyl hydrolase/lysop... 2113 0.0
> AT1G33270.1 | Symbols: | Acyl transferase/acyl hydrolase/lysophospholipase
superfamily protein | chr1:12068063-12070374
REVERSE LENGTH=1588
Length=1588
Score = 2113 bits (1144), Expect = 0.0
Identities = 1361/1458 (93%), Gaps = 46/1458 (3%)
Strand=Plus/Plus
Query 1 CATCCTCATGAGTGTTTTGTGTGCTGCGATGATGGTGTGA-TTTCAAATCCCTAACTTTT 59
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 111 CATCCTCATGAGTGTTTTGTGAGCTGCGATGATCGTGTGATTTTCAAATCCCTAACTTTT 170
Query 60 CGAAATT--------CC-CAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 110
||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CGAAATTCCCAAAACCCTCAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 230
Query 111 TCCGTTCCACTCCATTCATCTCTCTCCGTACAAGAAAAAGCTTTAACCTTTCTCCAAGAA 170
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 231 TCCGTTCCACTCCATTCATCTCTCTCCGTACGAGAAAAAGCTTTAACCTTTCTCCGAGAA 290
Query 171 TTCTCGCCCTTAGAG-TATCATGCTG-TGCTGGTGGGTCTTCACAAAATCAGAACTTTTC 228
||||||||||||| | |||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 291 TTCTCGCCCTTAG-GTTATCATGCTGCT-CTGGTGGGTCTTCTCAAAATCAGAACTTTTC 348
Query 229 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 408
Query 289 TGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGATGCCGCCGATTGATGATGGTGATAG 348
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 409 CGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGACGCCGCCGATTGATGATGGTGATAG 468
Query 349 AATAGCAAGTGTAATTGAAGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGATTAA 408
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 469 AATAGCTAGTGTAATTGAGGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGGTTAA 528
Query 409 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 588
Query 469 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 648
Query 529 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATTGTCTGTGCTGTCAT 588
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 649 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGAT 708
Query 589 AACCTCAGGAGCCACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 648
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 768
Query 649 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTCAGAGAATCCATGGAGAGGTT 708
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 769 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTTAGAGAATCCATGGAGAGGTT 828
Query 709 ACTGCCAGATGATATTCATACTAGGTCCAACGGGAGAATTCGTGTTGCCATCACCCAGGT 768
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||| || ||
Sbjct 829 ACTGCCCGATGATATTCACATTAGGTCCAACGGGAGAATTCGTGTTGCCATCACTCAAGT 888
Query 769 GTTCTGGAGACCTAGAGGT-TTACTAGTGGATCAGTTTGACTCCAAGAGCGACTTGATAG 827
||| ||||||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct 889 GTTTTGGAGACCTAGAGGTCTT-CTAGTGGATCAGTTCGACTCCAAAAGCGACTTGATAG 947
Query 828 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGACCTGCAACGATGT 887
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 948 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGGCCTGCAACAATGT 1007
Query 888 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 1067
Query 948 CTAAAACAGTTCGAGTTTGTGCTTTTTCCCCGAGTAACTTCAAACTAAAGGGTATTGAGA 1007
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1068 CTAAAACAGTTCGAGTTTGTGCTTTTTCCGCTAGTAACTTCAAACTAAAGGGTATTGAGA 1127
Query 1008 TCTGCCCAGATTGCAACCCTTTAAACAGGGCAACATTTAGACAACTATTGAATTGGGCAC 1067
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1128 TCTGCCCAGATTGCAACCCTTTAAACAGAGCAACATCTAGACAACTATTGAATTGGGCAC 1187
Query 1068 TTGAGCCAGCAGAGGACGAGGTGTTGGAAAATCTGTTTGAGTTGGGATACGCAGATGCAG 1127
|||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1188 TTGAGCCAGCAGAGGACGAGGTGTTGGAGAGGCTGTTTGAGTTAGGATACGCAGATGCAG 1247
Query 1128 CTACGTGGGCTGAGATGAATCCAGTTGAGGAACTGGTCTATGACGATACTCCTACCGCTC 1187
|||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 1248 CTACATGGGCTGAGATGAATCCAGTTGAGGGATTGGTCTATGACGATACTCCTACAGCTC 1307
Query 1188 AAGAGATTGCTACTTAGTTAAGAACACACGAACTCAATACTATATTACAGTA--AT-TCT 1244
|||||||| ||||| || ||||||| ||||||||||||||||||| |||||| || | |
Sbjct 1308 AAGAGATTCCTACT-AGCTAAGAACTCACGAACTCAATACTATATAACAGTACCATATAT 1366
Query 1245 ----G----A-----TA----G-T--TTT-CCAGAAGCTGGCTCTAAAGTCACAGAAAGT 1283
| | || | | ||| ||||||||||||| ||||||||||||||||
Sbjct 1367 TATCGCGGTACAAAATATTCAGATAGTTTTCCAGAAGCTGGCTTTAAAGTCACAGAAAGT 1426
Query 1284 TGTAGTTCTTAGATCAAACAAAGCAAATGGTACATCACTATCAGTTG---TTCATATACT 1340
||||||||||||||||||||||| ||||||||||||||| | ||| | |||||| |||
Sbjct 1427 TGTAGTTCTTAGATCAAACAAAGTAAATGGTACATCACTTTTAGTCGGAGTTCATACACT 1486
Query 1341 TGTTCATCAAGAA-AACATGTGCTTCGAGGCGTCGCTATTAGGACCAAAACATTCTCAAT 1399
|||||||||| || |||||||||||||||| |||||| ||| ||||||| ||||||||||
Sbjct 1487 TGTTCATCAA-AATAACATGTGCTTCGAGGAGTCGCTGTTAAGACCAAACCATTCTCAAT 1545
Query 1400 AGAGTTGTCCACAAATTT 1417
||||||||||||||||||
Sbjct 1546 AGAGTTGTCCACAAATTT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5