BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473506
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33290.1 | Symbols: | P-loop containing nucleoside triphosp... 1820 0.0
> AT1G33290.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12074099-12076104
FORWARD LENGTH=1281
Length=1281
Score = 1820 bits (985), Expect = 0.0
Identities = 1169/1256 (93%), Gaps = 20/1256 (2%)
Strand=Plus/Plus
Query 1 AACTATGGCCGGCGTGTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTTTTTCCCCAAT 60
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 23 AACTATGGCCGGAGTTTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTATTTCCCCAAT 82
Query 61 TAGCCGGCGTTCTCCGGTTTCCTCCACCGTCGCTTCCCTTTCTCTTCCAGATTCCTCCGC 120
| ||||||||| ||||||||||||| |||||||||| ||| |||||||||| |||||| |
Sbjct 83 TCGCCGGCGTTTTCCGGTTTCCTCCTCCGTCGCTTCTCTTGCTCTTCCAGACTCCTCCTC 142
Query 121 TATGATTATCGACGACAATCTCACCGCATTTCTTGAGATTCTTCCAAAAGATCTTCGTCA 180
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 143 TATGATCGTCGACGACAATCTCGGCGCATTTCTCGAGATTCTTCCAAAAGATCTTCGTCA 202
Query 181 TCGTCTCCTGAACGATTCTCGAAGAAACCAGCTCGTAGAGGTGATTATGGATTTGGGGAG 240
|||||| |||||||||| |||||||||||||||||||||| || |||||||| || ||
Sbjct 203 CCGTCTCTTGAACGATTCAAGAAGAAACCAGCTCGTAGAGGTCATAATGGATTTAGGAAG 262
Query 241 ACCACCTGAAGCACGTTATCTTGGAGAACCTGGAGGCCAGTATCTTAGGAACAACGAGGT 300
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 263 ACCACCTGAAGCACGTTATCTCGGAGAACCTGGAGGTCAATATCTTAGGAACAACGAGGT 322
Query 301 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTGGTAGGTGAATTTGGGGCTGATAATAG 360
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 323 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTTGTAGGTGAGTTTGGAGCTGATAATAG 382
Query 361 GGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAAGGCTTTAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 383 AGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAGGGATTCAT 442
Query 421 TGTCGGTTTGACTTGTCGGGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTCTATGA 480
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 443 TGTCGGTTTAACTTGTCGTGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTTTATGA 502
Query 481 CCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCCGGTGTTGGTAAGACCAC 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 503 TCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCTGGTGTTGGTAAGACCAC 562
Query 541 TGTTTTGCGAGAGATTGCCCGTGTCTTGTCCGATGAATTCCAGAAAAGAGTGGTGATAAT 600
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 563 TGTTTTGCGAGAGATTGCTCGTGTCTTGTCTGATGAATTCCAGAAAAGAGTGGTGATAAT 622
Query 601 TGATACAAGCAACGAAATAGGAGGAGATGGCGATATTCCACACTCAGCTATTGGAGGTTC 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 623 TGATACAAGCAACGAAATAGGAGGAGATGGTGATATTCCACACTCAGCTATTGGAGGTTC 682
Query 661 GCGTAGAATGCAAGTACCTAAGCCATCATTGCAGCATAAAGTGATGATTGAGGCAGTAGA 720
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 683 GCGTAGAATGCAAGTACCTAAGCCATCTTTGCAGCATAAAGTGATGATTGAGGCAGTTGA 742
Query 721 GAACCATATGCCTCAAGTGATCATCGTTGATGAGATCGGTACAGAAGCTGAAGCGCTTGC 780
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 743 GAATCATATGCCTCAAGTGATCATCGTTGATGAGATTGGCACAGAAGCTGAAGCACTTGC 802
Query 781 CTGTCGTTCCATTGCTGAAAGGGGAGTGATGCTTATTGGCACTGCTCATGGAGAGCAGCT 840
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 803 TTGTCGTTCCATTGCTGAAAGAGGAGTGATGCTAATTGGCACTGCTCATGGAGAGCAGCT 862
Query 841 ACAGAACATCATAAAGAATCCTACTCTTTCAGACCTGATTGGTGGTATTGAGACTGTCAC 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 863 ACAGAACATCATAAAGAATCCTACTCTTTCAGACTTGATTGGTGGTATTGAGACTGTAAC 922
Query 901 TCTTGGAGATGAAGAAGCGAGGGCAAGAAGGAGTCAAAAGAGTATTCTCGAGAGAAAAGC 960
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 923 GCTTGGAGATGAAGAAGCGAGGGCGAGAAGGAGTCAGAAGAGTATTCTCGAGAGAAAAGC 982
Query 961 TCCACCGACCTTTTATTTCCTGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1020
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TCCACCGACTTTTTATTTTTTGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1042
Query 1021 AACTGAAAAAAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1080
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AACTGAAAAGAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1102
Query 1081 AAGAGATGAGGAGTACAAGGTGGTGATAGAAAGATGGAAGGCGTACGACGGGCAAGGCAT 1140
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1103 AAGGGATGAAGAGTACAAGGTGGTGATAGAAAGATGGAAGGCATACGACGGGCAAGGCAT 1162
Query 1141 CTGATCTTTC-TTCATCGTTGTCAAA---A--A---T-----T---TGT--CTTTCTTAA 1181
||| |||| ||||||||||||||| | | | | ||| |||||||||
Sbjct 1163 TTGAG-TTTCCTTCATCGTTGTCAAACTTATGACACTAACAGTAAATGTGTCTTTCTTAA 1221
Query 1182 ATGATCAACCATTTGTATAAAATAATCAAAAGAAAACGATAAGCATGCATCAGTCT 1237
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 1222 ATGATCAACCATTTGTGTAAAATAATCAAAAGAAAACAATAAGCATGCATCCGTCT 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5