BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473511 Length=983 Score E Sequences producing significant alignments: (Bits) Value AT1G33330.1 | Symbols: | Class I peptide chain release factor ... 1343 0.0 > AT1G33330.1 | Symbols: | Class I peptide chain release factor | chr1:12084951-12086528 FORWARD LENGTH=1081 Length=1081 Score = 1343 bits (727), Expect = 0.0 Identities = 905/990 (91%), Gaps = 16/990 (2%) Strand=Plus/Plus Query 1 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 18 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCGC 77 Query 61 AGTGTCCCGTCCAC-GTTTTCT-CTGTCTTCCGTCATATACTATCGCAGGACTGTTCCAT 118 ||| |||||| || || || || |||| || || ||| ||| ||| ||| ||| || Sbjct 78 AGTATCCCGT-TACTGTCGGCTCCT-ACTTCTGTTATTTACAATCACAGAACTCTTCTAT 135 Query 119 CCAACGGACTCAGTACCCGATTCTGCTCGATTCTCCGTTATTCATCGTC---CGTCGACG 175 || | ||||||||||| ||||| |||||||||||||||||||||||||| || || | Sbjct 136 CCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTCATCGTCTGACGGCGTCA 195 Query 176 GCGGTGGAAGTAGCAGTGGCGATTCCGTTAGCTTTAGCGATTCCGTTAGCGTTGTTGCGG 235 ||| ||||||||| ||||||||| || || | || |||||||||||| |||||| ||| Sbjct 196 ACGGCGGAAGTAGCGGTGGCGATTTCGGTAACGATAACGATTCCGTTAGTGTTGTTTCGG 255 Query 236 ATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGAATTGATGAAGCAATGTAGAT 295 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 256 ATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGAATTGATGAAGCAATGTAGAT 315 Query 296 TAGAGACATTCAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 355 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 375 Query 356 TGCGTCTCAAACATCTCCCCACCGGAATCGTTGCTCAGGCCGTCGAGGATCGTTCACAGC 415 ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 376 TGCGTCTGAAACATCTCCCCACCGGAATCGTAGCTCAAGCCGTCGAAGATCGTTCACAGC 435 Query 416 ACAAGAACCGTGCTTCTGCTCTAAACCGGCTTCGTACGCTCCTGGCAATCAAAGTGAGGA 475 |||||||||||||||||||||||||||| |||||||||||||| || || |||||||| | Sbjct 436 ACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCTCGCCATTAAAGTGAGAA 495 Query 476 ACAAAGTGGACCTTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCCA 535 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 496 ACAAAGTGGACATTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCTA 555 Query 536 AGTCTACTATAAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 595 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 AGTCTACCATTAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 615 Query 596 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGATGGTTCTATCGCCGATTCTG 655 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 616 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGACGGTTCTATCGCTGATTCTG 675 Query 656 CCAAATTACTTGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 715 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 CCAAATTGCTGGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 735 Query 716 TTCGTATGGCCGTCAATAGCATGAGGGCAGCCAAGGGAATTAAGCCTCTCAAATAGTTGG 775 |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 736 TTCGTATGGCTGTCAATAGCATGAGAGCAGCCAAGGGAATAAAGCCTCTCAAATAGTTGG 795 Query 776 GATGTATCGGCATTTGAAAGATGACGTGCGGGTCTTTGACGAGTTGTATTTAGGTGGCTT 835 ||||||||||||||||||||||||||| |||| ||| ||| |||||||| | ||| || Sbjct 796 GATGTATCGGCATTTGAAAGATGACGTTCGGGCCTTCGACAAGTTGTAT---G-TGGATT 851 Query 836 CTGCAGCACAGTGACTACCATTTGATGCACCACATATTGTATACAAAACAAA-GGTGAAA 894 |||||||||||| |||||||| |||||||| || |||||||||||| ||| ||||||| Sbjct 852 --GCAGCACAGTGATTACCATTTTATGCACCATATTTTGTATACAAAAAAAAAGGTGAAA 909 Query 895 TGTTGAGTTCAGTCTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTGTTTGAGA 954 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 910 TGTTGAGTTCAGTTTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTATTTGAGA 969 Query 955 TGATATACTATAG-TCTGTTCAAATGTTTA 983 ||||||||||||| | |||||||||| ||| Sbjct 970 TGATATACTATAGGT-TGTTCAAATGGTTA 998 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48124312826 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5