BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473561
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34060.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 2178 0.0
AT1G34040.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1349 0.0
> AT1G34060.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:12396420-12398369 REVERSE
LENGTH=1603
Length=1603
Score = 2178 bits (1179), Expect = 0.0
Identities = 1406/1515 (93%), Gaps = 18/1515 (1%)
Strand=Plus/Plus
Query 1 GTAATTGATCCCCACCTTTTTTACTTACAAAAAGTTGAAGCTTAA--TTTTTTGCAGGTT 58
|||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||
Sbjct 1 GTAATTGATCCCCACCTTTTATACAAACAAAAAGTTGAAGCTGAATTTTTTTTGCAGGTT 60
Query 59 TTAAGTAAAGACGATGCAGAAGAAGCTACTTCTTACAGTGTCAATCTTTTTGAATCTCGT 118
||||||||||| ||||||||||||||||||||||| ||| |||||| | |||||||||||
Sbjct 61 TTAAGTAAAGATGATGCAGAAGAAGCTACTTCTTATAGTATCAATCATCTTGAATCTCGT 120
Query 119 ATTCACCGTTCATATTCTTTATTATAGTTCAACTACATGGAATCCGACGTGGACC-ACTA 177
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| || |
Sbjct 121 ATTCACCATTCATATTCTTTATTATAGTTCAACCACATGGAATCCAACGTGGACCAAC-A 179
Query 178 GAGCTGCCGCGGAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTT 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGCTGCAGCGGAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTT 239
Query 238 TTGTGGATGGTCTTGGTGTCCTTGATGGCCAGAAACCTTCTTGTGAGTGCAACAATTGCT 297
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 240 TTGTGGATGGTCTTGGTGTCCTTGACGGCCAGAAACCTCCTTGTGAGTGCAACAATTGCT 299
Query 298 ACACCGGAAAAGATTGCTCTGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAG 357
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACATAGGAAAAGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAG 359
Query 358 ACCCTTTGTTCTTGGAGCCTTTCTGGATGCGACAAGCAGAGAGCAGCGCGGTTTTGGTCT 417
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 360 ACCCTTTGTTCTTGGAGCCTTTCTGGATGCGACAAGCAGAGAGAAGCGCGATTTTGGTCT 419
Query 418 CGGGATGGCACAGGATGAGTTACATTTATC-AAGATGGGACATATGTGTCTCGAGAGCTC 476
|||||||||||||||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 420 CGGGATGGCACAGGATGAGTTATATATA-CGAAGATGGGACATATGTGTCTCGAGAGCTC 478
Query 477 GAGAAGGTCATTAGGAAACTGCATAGTGTTGTGGGAAACGCTGTTACAGATAACAGATTC 536
|||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 479 GAGAAGGTCATTAGAAAACTTCATAGTGTAGTGGGAAATGCAGTTACAGATAACAGATTC 538
Query 537 GTAATCTTTGGATCTGGAACCACACAATTGCTGGCAGCAGCTGTACATGTCCT-GTCTTT 595
||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 539 GTAATCTTTGGATCTGGTACCACACAATTGCTTGCAGCAGCTGTTCATG-CCTTGTCTTT 597
Query 596 GACAAACTCATCATTATCATCACCTGCAAGGCTTTTGACTTCTATTCCATACTACGCTAT 655
||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 598 GACAAACTCATCAGTATCATCACCTGCAAGACTTCTGACTTCTATTCCATACTATGCTAT 657
Query 656 GTATAAGGACCAAGCGGAGTTCTTTGATTCAGCACATCTCAAGTTTGAAGGAGATGCGTC 715
||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 658 GTACAAGGACCAAGCAGAGTTTTTTGATTCAGCACATCTCAAGTTTGAAGGAAATGCGTC 717
Query 716 TGCGTGGAAGCAGAGCGGACGCAATGATAATACCACACAAGTTATAGAGGTAGTAACATC 775
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 718 TGCGTGGAAGCAGAGCGGACGCAATGATAATATCACACAAGTTATAGAGGTGGTGACATC 777
Query 776 TCCAAATAATCCAGATGGGAAATTGAAAAGAGCGGTT-TTAGATGGTCCTAATGTGAAAA 834
||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 778 TCCGAATAATCCAGATGGGAAATTGAAAAGAGCGGTTCTT-GATGGTCCTAATGTGAAAA 836
Query 835 TAGTGCATGATTTTGCTTATTACTGGCCTTATTTCACACCTATTACACATCCAGTTGATG 894
| | ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 837 CACTTCATGATTATGCTTATTACTGGCCTCATTTCTCACCTATTACACATCCAGTTGATG 896
Query 895 AAAATTTGAGCTTGTTCAGTCTCTCAAAGGCTACAGGTCATGCTGGCTCAAGATTCGGGT 954
|| |||||||| |||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 897 AAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGTTCAAGATTCGGGT 956
Query 955 GGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGACAGATATATACGTTTAACTA 1014
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 957 GGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGATAGATTTATACGTTTAACTA 1016
Query 1015 GTATGGGAGTTTCCAAAGAAACACAGCTTCATGTTCTTCAGTTGCTCAAAGTAGTAGTTG 1074
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTATGGGAGTTTCTAAAGAAACACAGCTTCATGTTCTTCAGTTGCTCAAAGTAGTAGTTG 1076
Query 1075 GCGATAGAGGCGATGATATATTCAATTTTGGCTATGGAACTCTGAAGAAAAGATGGGAGA 1134
| ||| ||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1077 GTGATGGAGGCAATGAGATATTCAGTTTTGGTTATGGAACTGTGAAGAAAAGATGGGAGA 1136
Query 1135 TACTGAACAAGATCTTGTCCATTTCCACGCGTTTCTCGCTCCAGACTATCAACCCTGAGT 1194
||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1137 CACTGAACAAGATCTTCTCCATGTCCACGCGTTTCTCGCTCCAGACAATCAAACCTGAGT 1196
Query 1195 ACTGCAACTATTTCAAGAAAGTCAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTG 1254
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTG 1256
Query 1255 AGAGACCAGAAGATACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAGGACGCA 1314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAGACCAGAAGACACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAGGACGCA 1316
Query 1315 ATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTTCGATTGAGTCTCATCAGATCACAAG 1374
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1317 ATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCAGATCACAAG 1376
Query 1375 ATGACTTTGATCAGCTTATTGATATGTTGAAGAAGTTAGTCT-CC--GAGGAAGCCGTAG 1431
||||||||||||||||||||| |||||||||||||||||| | || ||||||| ||
Sbjct 1377 ATGACTTTGATCAGCTTATTGCTATGTTGAAGAAGTTAGTTTACCATGAGGAAGATGTTC 1436
Query 1432 GAGCTGACTCCATCTGATATTTACTTAGGCCTCTTTAATTAA-GCCTAGCG-TTAGGCCC 1489
|||| | | | || | || |||||||||||| |||| |||||||| |||| ||
Sbjct 1437 CTTCTGAAAACTT-T-ATGTATATTTAGGCCTCTTTG-TTAAAGCCTAGCGCTTAGTCCA 1493
Query 1490 ATTCTATAAAACCTC 1504
|||||||||||||||
Sbjct 1494 ATTCTATAAAACCTC 1508
> AT1G34040.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:12374433-12376179 FORWARD
LENGTH=1374
Length=1374
Score = 1349 bits (730), Expect = 0.0
Identities = 1187/1402 (85%), Gaps = 54/1402 (4%)
Strand=Plus/Plus
Query 71 GATGCAGAAGAAGCTACTTC-TTACAGTGTCAATCTTTTTGAATCTCGTATTCACCGTTC 129
||| || || ||||||| || || ||| ||| ||| | |||||||| || |||||| |||
Sbjct 3 GATACATAACAAGCTAC-TCATTGCAGGGTCGATCATCTTGAATCTTGTTTTCACCATTC 61
Query 130 ATATTCTTTATTATAGTTCAA-CTACATGGAATCCGACGTGGACCACTAGAGCTGCCGCG 188
||||||||||| ||| | ||| | ||||||| ||| |||||||||| |||||| ||| |
Sbjct 62 ATATTCTTTATAATAATACAAGC-ACATGGAGTCCAACGTGGACCAATAGAGCCGCCTTG 120
Query 189 GAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTTTTGTGGATGGT 248
|| |||||| ||| ||||||| |||||||||||||||| |||||| ||| ||||| |||
Sbjct 121 GAGGCAGAAGCTGCAGCCTCTGTTTCATGCTCAGGCCATGGCAGATCTTACGTGGACGGT 180
Query 249 CTTGGTGTCCTTGATGGCCAGAAACCTTCTTGTGAGTG-CAACAATTGCTACACCGGAAA 307
|||||||||||||| ||||| ||| | |||||||||| | || |||||||||| || ||
Sbjct 181 CTTGGTGTCCTTGACGGCCATAAA-C--CTTGTGAGTGTC-ACGATTGCTACACAGGCAA 236
Query 308 AGATTGCTCTGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTT 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTT 296
Query 368 CTTGGAGCCTTTCTGGATGCGACAA-GCAGA-GAGCAGCGCGGTT-TTGGTCTCGGGATG 424
|||||||||||||||||| ||| || ||||| || || |||||| || | || |||||
Sbjct 297 CTTGGAGCCTTTCTGGATTCGA-AAGGCAGAGGA-AAGTGCGGTTGTT-GAGTCAGGATG 353
Query 425 GCACAGGATGAG-T-TACATTTATCAAGAT-GGGACATATGTGTCTC-G-AGAGCTCGAG 479
|||||||||||| | ||| |||| | ||| || | | | | | || | |||||| |||
Sbjct 354 GCACAGGATGAGTTATACTTTTAAC-GGATATGG-CTTGTTTATGTCGGCAGAGCTTGAG 411
Query 480 AAGGTCATTAGGAAA-CTGCATAGTGTTGTGGGAAACGCTGTTACAGATAACAGATTCGT 538
||| |||||| |||| | |||| ||| |||||||| || ||||| |||||||||||| |
Sbjct 412 AAGATCATTA-GAAAGTTACATAATGTAGTGGGAAATGCAGTTACTGATAACAGATTCAT 470
Query 539 AATCTTTGGATCTGGAACCACACAATTGCTGGCAGCAGCTGTACATGTCC-TGTCTTTGA 597
|||||||||| ||||| ||||||||||||| ||||| |||| |||| || ||||| |
Sbjct 471 AATCTTTGGAGCTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATG-CCTTGTCTCAAA 529
Query 598 CAAACTCATCATTATCATCACCTGCAAGGCTTTTGACTTCTATTCCATACTACGCTATGT 657
|||| | |||||||| | ||| |||| ||| |||||||| ||||||||||| | |||
Sbjct 530 CAAA-T--TCATTATC-T--CCTTCAAGACTTGTGACTTCTGTTCCATACTACAATTTGT 583
Query 658 ATAAGGACCAAGCGGAGTTCTTTGATTC-AGCACATCTCAAGTTTGAAGGAGATGCGTCT 716
| || | ||||| || |||||| |||| | || ||||||||||||||||||||||||||
Sbjct 584 ACAAACAACAAGCAGATTTCTTTAATTCTACCA-ATCTCAAGTTTGAAGGAGATGCGTCT 642
Query 717 GCGTGGAAGCA-GAGCGGA-CGCAATGATAATACCACACAAGTTATAGAGGTAGTAACAT 774
||||||||| | |||| || ||||||||| ||| | ||||||||||||| |||| ||||
Sbjct 643 GCGTGGAAG-AGGAGC-GAGCGCAATGATGATATTAAACAAGTTATAGAGATAGTGACAT 700
Query 775 CTCCAAATAATCCAGATGGGAAATTGAAAAGAGCGGTT-TTAGATGGTCCTAATGTGAAA 833
|||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 701 CTCCGAATAATCCAGATGGGAAGCTGAAAAGAGCGGTTCTT-GATGGTCCTAATGTG-AA 758
Query 834 ATA-GTGCATGATTTTGCTTATTACTGGCCTTATTTCACACCTATTACACATCCAGTTGA 892
||| | ||||||| |||||| |||||||||||||| |||||||||||| || || |||
Sbjct 759 ATACATTCATGATTATGCTTACTACTGGCCTTATTTTTCACCTATTACACGTCAAGCTGA 818
Query 893 TGAAAATTTGAGCTTGTTCAGTCTCTCAAAGGCTACAGGTCATGCTGGCTCAAGATTCGG 952
|||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 819 TGAAGATTTGAGCTTGTTCAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGG 878
Query 953 GTGGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGACAGATATATACGTTTAAC 1012
|||| ||| ||||| || ||| || |||||||||||||| | | ||||||| || |||
Sbjct 879 CTGGGCATTAGTAAAAGAGAAAACTGTTTATGAAAAAATGAAAATATATATAAGTCTAAG 938
Query 1013 TAGTATGGGAGTTTCCAA-AGAAACACAGCTTCATG-TTCTTCAGTTGCTCAAAGTAGTA 1070
|||||||||||||| ||| ||| |||||||||| || || | |||||||| ||||||||
Sbjct 939 TAGTATGGGAGTTT-CAAGAGACACACAGCTTCGTGCTT-TGCAGTTGCTTAAAGTAGT- 995
Query 1071 G-TTGGCGATAGAGGCGATGATATATTCAATTTTGGCTATGGAA-CTCTGAAGAAAAGAT 1128
| |||| ||| ||||| |||| |||||| |||||| ||||||| || |||| |||||||
Sbjct 996 GATTGGTGATGGAGGCAATGAAATATTCCGTTTTGGTTATGGAACCT-TGAAAAAAAGAT 1054
Query 1129 GGGAGATACTGAACAAGATCTTGTCCATTTCCACGCGTTTCTCGCTCCAGACTATCAACC 1188
||||||| |||||||||| || ||||| || |||||||| |||||| | |||||||| |
Sbjct 1055 GGGAGATTTTGAACAAGATTTTTTCCATGTCTACGCGTTTTTCGCTCGAAACTATCAAAC 1114
Query 1189 CTGAGTACTGCAACTATTTCAAGAAAGTCAGAGAGTTTACTCCTTCTTATGCATGGGTGA 1248
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1115 CTGAGTATTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGA 1174
Query 1249 AGTGTGAGAGACCAGAAGATACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAG 1308
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 1175 AGTGTGAGAGACCAGAAGACACAGACTGCTATGAGATTTTCAAAGCGGCGAAGATAACAG 1234
Query 1309 GACGCAATGGC-AATGTGTTTGGATCAGAAGAAAGGTTTGTTCGATTGAGTCTCATCAGA 1367
|||| ||||| || |||||||||| || ||||||||||| || | ||||||||||||
Sbjct 1235 GACGTAATGGGGAAA-TGTTTGGATCGGATGAAAGGTTTGTGCGGCTAAGTCTCATCAGA 1293
Query 1368 TCACAAGATGACTTTGATCAGCTTATTG-ATATGTTGAAGAAGTTAGTCTCCGAGGAAGC 1426
|||||||| ||||||||||||||||||| | |||||||||||||| |||||| |||||||
Sbjct 1294 TCACAAGACGACTTTGATCAGCTTATTGCA-ATGTTGAAGAAGTTTGTCTCCAAGGAAGC 1352
Query 1427 CGTAGGAGCTGACTCCATCTGA 1448
|||| | |||||||||||||
Sbjct 1353 TGTAGTTGTTGACTCCATCTGA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5