BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473640
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31330.1 | Symbols: PSAF | photosystem I subunit F | chr1:11... 1362 0.0
> AT1G31330.1 | Symbols: PSAF | photosystem I subunit F | chr1:11214824-11216037
REVERSE LENGTH=951
Length=951
Score = 1362 bits (737), Expect = 0.0
Identities = 887/953 (93%), Gaps = 36/953 (4%)
Strand=Plus/Plus
Query 1 AAGAATCTAAAGCTCCTCCCATAAGTCCTCTCTCCACACTTCACCCAAAGA-TCCAGAAC 59
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1 AAGAATCTAAAGCTCCTCCCATAAGTCTTCTCTCCACACTTCACCCAAA-ACTCCAGAAC 59
Query 60 CCTAGAATTCGAAACCTCC-AAGAACCCGA-AAAGCGCGATGTCGCTCACAATCCCGACG 117
|||||||||||||| |||| |||||||||| ||||||| ||||||||||| |||||| ||
Sbjct 60 CCTAGAATTCGAAATCTCCAAAGAACCCGACAAAGCGCCATGTCGCTCACTATCCCGGCG 119
Query 118 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 179
Query 178 GCAAGATTCGTCTGCTCCGATGACAAA---TCCTCCTCCACACCGCAATCCATGAAAGCT 234
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 180 GCAAGATTCGTCTGCTCCGATGACAAATCCTCCTCCTCCACACCTCAATCCATGAAAGCT 239
Query 235 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCGATGCCAGCTGTCGCT 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCTATGCCAGCTGTCGCT 299
Query 295 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 359
Query 355 CAGATCAAGAAGCTTGAATCATCTCTTAAGCTTTACGCTCCTGAATCTGCTCCTGCTCTT 414
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 360 CAGATCAAGAAGCTTGAATCTTCTCTTAAGCTCTACGCTCCTGAATCTGCCCCTGCTCTT 419
Query 415 GCTCTTAATGCTCAGATCGAGAAAACCAAACGCAGGTTTGACAACTACGGGAAGTACGGA 474
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GCTCTCAATGCTCAGATCGAGAAAACCAAACGCAGGTTCGACAACTACGGGAAGTACGGA 479
Query 475 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATTGTGAATGGAGACCAGCGGCATTGG 534
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 480 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATAGTGAACGGAGACCAGCGGCATTGG 539
Query 535 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 599
Query 595 GGAAGAAGCTATTTAATAGCTATTAGTGGTGATAAGAAACCCGCGATGAAAGAGATCATC 654
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 GGAAGAAGCTACTTAATAGCTATTAGTGGTGAGAAGAAACCCGCGATGAAAGAGATCATC 659
Query 655 ATCGATGTTCCTTTGGCTAGTCGGATAATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 714
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 ATCGATGTTCCTTTGGCTAGTCGGATCATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 719
Query 715 TACAGAGAGTTTGTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAA------T-GTTA 767
|||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 720 TACAGAGAGTTTCTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAAGGGAACTTGTTT 779
Query 768 --------------A-TCTCTCTAATCTCTATGTTTTCCATTGTACCTATTGAAAAACAA 812
| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 780 TCTGCTTTTGTGTTACTCTCTCTAATCTCTTTGTTTTCCATTGTACTTATTGAAAAACAA 839
Query 813 TGCATTGTCGAAAACTTT-TAAAATTTGGATTGCGCAATTTCGAAAGAATCATGGCTAAA 871
||||||||||||||| || ||||||||||||||||||| | |||||||| |||||||||
Sbjct 840 TGCATTGTCGAAAACCTTATAAAATTTGGATTGCGCAAGTA-GAAAGAATTATGGCTAAA 898
Query 872 AAGGTGATTGT--GATC---ATTTTGCGGTGTAGTGATTGCTCTGTGAAGCTC 919
| |||||||| ||| |||||||||| ||||||||||| ||||||||||
Sbjct 899 ATGGTGATTGACAGATTGTGATTTTGCGGTCTAGTGATTGCTATGTGAAGCTC 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5