BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473685 Length=1350 Score E Sequences producing significant alignments: (Bits) Value AT1G35560.1 | Symbols: | TCP family transcription factor | ch... 1805 0.0 > AT1G35560.1 | Symbols: | TCP family transcription factor | chr1:13115826-13117235 REVERSE LENGTH=1410 Length=1410 Score = 1805 bits (977), Expect = 0.0 Identities = 1260/1388 (91%), Gaps = 54/1388 (4%) Strand=Plus/Plus Query 1 CAAGTTTGTTTGTTAGTTTATTCCAtttttttgtgt-ttttttttCCCATAATTTATAAA 59 |||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 39 CAAGTTTGTTTGTTTGTTTATTCCATTTTCTTGTGTGTTTTTTTCCCCATAATTTATAAA 98 Query 60 TTTTATAATC-A-ATGGAGT-------------CC----C-ACAACAACACCACTGGTTC 99 |||||||| | | ||||||| || | ||||||||||||||||||| Sbjct 99 TTTTATAAGCAATATGGAGTCCCACAACAACAACCAGAGCAACAACAACACCACTGGTTC 158 Query 100 GGCCCATCTGGTCCCATTCATGGGACCAATCTCCGGTTCAG------TAACAACCACCGC 153 ||||||||||||||||| ||||||||||||||||||||||| |||| ||||| || Sbjct 159 GGCCCATCTGGTCCCATCCATGGGACCAATCTCCGGTTCAGTCTCATTAACCACCACTGC 218 Query 154 TCAAAATTCCACTACCACCACCGTCTCGGCCGCTAAAACACCGGCCAAACGACCCTCCAA 213 || ||| |||||||||||||||||| | |||||||||||||| || |||||||| ||||| Sbjct 219 TCCAAACTCCACTACCACCACCGTCACCGCCGCTAAAACACCCGCAAAACGACCGTCCAA 278 Query 214 GGACCGCCACATCAAAGTAGACGGTCGCGGCCGGAGGATACGTATGCCGGCTATCTGCGC 273 |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 279 GGACCGTCACATCAAAGTAGACGGACGTGGCCGGAGGATACGTATGCCGGCTATCTGCGC 338 Query 274 GGCGCGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCAGACGGCGAGACTATAGA 333 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 339 AGCACGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCGGACGGCGAGACTATAGA 398 Query 334 GTGGCTGCTCCAACAAGCGGAGCCGGCTATCATCGCCGCCACCGGAACCGGAACCATACC 393 |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 399 GTGGCTGCTCCAACAAGCGGAGCCAGCTATCATCGCAGCCACCGGAACTGGAACCATACC 458 Query 394 GGCGAATATCTCTACTTTGAACGTCTCTCTCCGAAGTAGTGGCTCTACCCTCTCAGCTCC 453 |||||||||||||||||||||| ||||||| ||||| ||||||||||| || |||||||| Sbjct 459 GGCGAATATCTCTACTTTGAACATCTCTCTTCGAAGCAGTGGCTCTACTCTTTCAGCTCC 518 Query 454 ACTGTCTAAATCTTTCAACATCGGAAGAGCTGCTCAAAACGCTGCCGTTTTCGGGTTCCA 513 |||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||||| Sbjct 519 ACTGTCTAAATCTTTCCACATGGGAAGAGCGGCTCAAAACGCTGCCGTTTTTGGGTTCCA 578 Query 514 GCAACAGCTTTATCCTCCTCATCACATCATGACAGAttcttcttcttcttctcttcCCAA 573 |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 579 GCAACAGCTTTATCATCCTCATCATATCACGACAGATTCTTCTTCTTCTTCTCTTCCCAA 638 Query 574 AATATTCCGTGAAGAAGATCTCTTTAAAGATCCTAATTCCCTCGATCAAGAACCCGGTTC 633 || |||||||||||||||||| |||||||||||||||| || ||||||||||||||||| Sbjct 639 AACATTCCGTGAAGAAGATCTTTTTAAAGATCCTAATTTTCTAGATCAAGAACCCGGTTC 698 Query 634 AAGATCGCCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGG-TCTAACCCGGTCAA 692 |||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 699 AAGATCACCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGGTTC-GACCCGGTCAA 757 Query 693 GAACACAAAACATGATACCGCCGATGTGGGCAGTGGCGGCGCCAACGCCAGCCTCCACAA 752 |||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 758 GAACACAAAATATGATACCGCCGATGTGGGCACT---AGCGCCAACGCCAGCCTCCACAA 814 Query 753 ACGGAGGTAGTGCGTTTTGGATGTTACCAGTC---GGAGGAGGAGGTCCGGCCAACGTTC 809 ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 815 ACGGAGGTAGTGCTTTTTGGATGTTACCAGTCGGAGGAGGAGGAGGTCCGGCTAACGTTC 874 Query 810 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 934 Query 870 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAATTAGGGTTAGGTGTTGCTGATA 929 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 935 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAGTTAGGGTTAGGTGTTGCAGAAA 994 Query 930 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGGCGGTGGTCGGGTTGGTCTTGGAA 989 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 995 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGACGGTGGTCGGGTTGGTCTCGGAA 1054 Query 990 TGAGTCTAGAGCAAAAACCTCAACATCAAGTGAGTGATCATGCTACT-GAAGACCAAAAT 1048 ||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||| Sbjct 1055 TGAGTCTTGAGCAAAAGCCTCAACATCAAGTGAGTGATCATGCTACTAGA-GACCAAAAT 1113 Query 1049 CTTACTATTGATGGTTCTCCTTGAAGAGACGTCATAAtttttttggtttttAAAAAGTGT 1108 | |||||| |||||||||||||||| |||| |||| |||| ||||||||||||||||||| Sbjct 1114 CCTACTATAGATGGTTCTCCTTGAA-AGACTTCATGATTTCTTTGGTTTTTAAAAAGTGT 1172 Query 1109 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCGATGTTAATATGGGTTTTAGGGT 1168 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1173 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCAATGTTAATATGGGTTTTAGGGT 1232 Query 1169 TTGCTTTTCGGGATTGCCAAATTGTTATTTTAA-AAAATGGAAGt-tt-ttttCGTTGCA 1225 | |||||||||||||||||||||||||||| || |||||||| | || |||| |||||| Sbjct 1233 TGGCTTTTCGGGATTGCCAAATTGTTATTT-AAGAAAATGGATTTATTGTTTTGGTTGCA 1291 Query 1226 CCAA-AGATAAAATGAGTTTTGCAACTCTTTTTATTTGATAAAAAAGCATGTCACTGAAG 1284 || | || || |||||||||||||||||||||| ||| |||||||||||||| || Sbjct 1292 T-AATA-ATTAAC-GAGTTTTGCAACTCTTTTTATTCGATGCAAAAGCATGTCACTTAA- 1347 Query 1285 AGTGAAGTAAATATAGTTGAATCT--ATGGGTAACATAATGAACAAAAGAATATATTAAA 1342 || ||| | ||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct 1348 AG-GAA--A--TATAGTTGAATCTCTATGTGTAACATAATGGACAAAAGAATAAATTAAA 1402 Query 1343 TATTTATC 1350 |||||||| Sbjct 1403 TATTTATC 1410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66465521580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5