BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473693
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35680.1 | Symbols: | Ribosomal protein L21 | chr1:13208736... 1238 0.0
> AT1G35680.1 | Symbols: | Ribosomal protein L21 | chr1:13208736-13210418
FORWARD LENGTH=876
Length=876
Score = 1238 bits (670), Expect = 0.0
Identities = 795/853 (93%), Gaps = 18/853 (2%)
Strand=Plus/Plus
Query 8 CTCTCTCAGGCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 67
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 CTCTCTCAGTCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 83
Query 68 TCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCTCTCTAAA 127
||||||||||||||||||| ||| |||||||| || |||||||| |||||||||||||||
Sbjct 84 TCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCTCTCTAAA 143
Query 128 CCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGCGTCGACG 187
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 144 CCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGCGTCGACG 203
Query 188 TCTCGGACCGCATTCACCGTCGCTCCTAAATTCGCTGAATCAGTCGTCGAAGCTGAACCA 247
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 204 TCTCGAACCGCATTCACCGTCGCTCCGAAATTCGCGGAATCAGTCGTCGAAGCTGAACCG 263
Query 248 GAAACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAAGTTACTGAGGAGAAA 307
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 264 GAGACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAGGTTACTGAGGAAAAA 323
Query 308 GCTAAACGAGAAGAGATTTTCGCTGTTGTTATGGTTGGTGGACGCCAATACATAGTGTTT 367
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 324 GCTAAACGAGAAGAGATTTTCGCTGTTATTATGGTTGGTGGACGCCAATACATAGTGTTT 383
Query 368 CCAGGGAGATATCTCTACACTCAGAGGCTGAAAGATGCAAATGTCGATGATCAGATTGTT 427
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 384 CCAGGGAGATATCTCTACACTCAGAGGCTAAAAGATGCAAATGTTGATGACCAGATTGTT 443
Query 428 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAACCGGTTGTG 487
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 444 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAGCCGGTTGTG 503
Query 488 ACCAATGCCACTGTACATGCTGTAGTGGAAAATCAGGGTCTGAATGACAAAGTGGTAGTC 547
||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||||
Sbjct 504 ACCAATGCCACTGTACATGCTGTTGTGGAAAGTCAAGGTTTGAATGATAAAGTGGTAGTC 563
Query 548 TTCAAGTACAAGCCTAAGAAGAAATACCGTAGAAATATTGGTCACAGACAGCCAAATACG 607
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 564 TTCAAGTACAAGCCTAAGAAGAAGTACCGTAGAAATATCGGTCACAGACAGCCGAATACG 623
Query 608 AGGATTAGGATTACAGGAATCACAGGGTATGAAGAGTATCCAGCGTCGCCCAATGTTGCG 667
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 624 AGGATTAGGATTACCGGAATCACAGGGTATGAAGAGTATCCAGCCTCGCCCAATGTTGCA 683
Query 668 GTTTAAATGTGTTGAGAAGTATAGGATCTTTGACACAATATGTATCTTGAATGTTAAA-T 726
||| | | ||||||| | ||||||||||||| |||| |||||||||||||| |
Sbjct 684 GTT-----G-G---AGAAGTA-A--ATCTTTGACACAAAATGTTTCTTGAATGTTAAAAT 731
Query 727 TTTTCTGATCTTCTCTATGTAATTTTTGTAAGGACCA-GATCATTTCATTTCTTCTGAGA 785
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 732 TTTTCTGATCTTCTCTATGTAATTTT-GTAAGGACCCTGGTCATTTCATTTCTGCTGAGA 790
Query 786 TCCCTTTTATTAAAATGTACCTGCTTTTGCCATTCTTTGATCACAAATTCTAAGTTAGTG 845
| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 791 TTCCTTTTATTAATATGTACCT--TTT-GCCATTCTTTGATCACAAATTCTAAGTTAGTG 847
Query 846 TAAGAAAACTTCA 858
|| ||||||||||
Sbjct 848 TATGAAAACTTCA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5