BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473737
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01270.1 | Symbols: ORF77.2 | Protein precursor Ycf15, putat... 390 2e-108
ATCG00870.1 | Symbols: ORF77.1 | Protein precursor Ycf15, putat... 390 2e-108
> ATCG01270.1 | Symbols: ORF77.2 | Protein precursor Ycf15, putative,
chloroplast | chrC:144921-145154 REVERSE LENGTH=234
Length=234
Score = 390 bits (211), Expect = 2e-108
Identities = 215/217 (99%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75
Query 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 135
Query 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195
Query 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217
|||||||||||||||||||||||||||||||||||||
Sbjct 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232
> ATCG00870.1 | Symbols: ORF77.1 | Protein precursor Ycf15, putative,
chloroplast | chrC:93495-93728 FORWARD LENGTH=234
Length=234
Score = 390 bits (211), Expect = 2e-108
Identities = 215/217 (99%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75
Query 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 135
Query 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195
Query 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217
|||||||||||||||||||||||||||||||||||||
Sbjct 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9701675557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5