BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473738
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2176 0.0
> AT1G42430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G55760.3);
Has 186 Blast hits to 143 proteins in 47 species: Archae -
0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses
- 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891375-15894444
FORWARD LENGTH=1540
Length=1540
Score = 2176 bits (1178), Expect = 0.0
Identities = 1428/1544 (92%), Gaps = 36/1544 (2%)
Strand=Plus/Plus
Query 3 ACTGAAACTGAAACTAAAACTGAAACACTtctctttctctctctctctctctAAGCTCGC 62
||||||||||||||| |||||||||||| | || ||||||||||||| | | |||||
Sbjct 7 ACTGAAACTGAAACTGAAACTGAAACAC-T-TC--TCTCTCTCTCTCT-T-T---CTCGC 57
Query 63 TTCCACGAATCGAGAGTTGTACAAATTCGCTTCTTAGGGTTTCTCATTTC-TCGAA--T- 118
|||||||||||||||||| |||||||||||||| |||||||||||| ||| || || |
Sbjct 58 TTCCACGAATCGAGAGTTCTACAAATTCGCTTCCTAGGGTTTCTCAATTCTTCTAATTTC 117
Query 119 TTCACTTCCATGGCGAATCTATGAGCGAAATGGCGGCTAGCTCCGCAGTCTCTCTTCTCG 178
|||| ||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 TTCATTTCTATGGCGAGTCAATGAGCGAAATGGCGGCTAGCTCCGCAATCTCTCTTCTCG 177
Query 179 ATATCAAGCTCCGACGATTCGGCGTT-----AA-T---CATGAATTGCGCCTAACGAAGT 229
||||||| |||||||||||||||||| || | ||||||||||||||||| ||||
Sbjct 178 ATATCAAACTCCGACGATTCGGCGTTGGCGCAAGTAACCATGAATTGCGCCTAACTAAGT 237
Query 230 GG--AAAAGGAAACTCCTTTGCTTCGATGGTGATCAAACGAGAAGATTTAGGTGCTTTGC 287
|| ||||| | | | || | || | || ||||||||||| | ||||| ||
Sbjct 238 GGTTCAAAGGTGA-T-C-AAGC--C---GGAGCTCCGACGAGAAGATTCACCTGCTTCGC 289
Query 288 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCGGAGGAACGGCGTTTCGATCAGAA 347
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 290 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCAGAGGAACGGCGTTTTGATCAGAA 349
Query 348 GACGAGTGCCCACGGTGCCGGAATCAAAACTTCATCTTCTGCAGTGCCATTTGCTTCTCC 407
|| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 350 GATGAGTGCTCACGGTGCCGGAATCAAAACTTCTTCCTCTGCAGTGCCATTTGCTTCTCC 409
Query 408 AAAATCTCGATTTGTGTCCAAGCAAGAAAAGTTCTACCCTCGTTGTACTCCAAGGCTTAC 467
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 410 TAAATCTCGATTTTTGTCTAAGCAAGAAAAGTTCTATCCTCGTTGTACTCCAAGGCTTAC 469
Query 468 TGGCCCTCAGTCCCGTGATACTCCGCCTAAACGAGACACCGGGATTGCTAATGAAAAGGA 527
||| |||||||| ||||||||||| |||||| ||||||| ||||| ||||||||||||||
Sbjct 470 TGGTCCTCAGTCTCGTGATACTCCTCCTAAAAGAGACACTGGGATAGCTAATGAAAAGGA 529
Query 528 TTGGGGCATTGATTTGTTGAATGAGAATGTGAATG-AGTCTGGCACTAATGAAGATGGCA 586
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 530 TTGGGGGATTGATTTGTTGAATGAGAATGTGAATGAAG-CTGGCACTAATGAAGATGGTA 588
Query 587 GTAGTTGGTTTAGAGAGAGTGGACATGATCTGGGAGATAATGGTTACAGATGTAGGTGGA 646
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 589 GTAGTTGGTTTAGAGAAAGTGGACATGATTTGGGAGATAATGGTTACAGATGTAGGTGGT 648
Query 647 CAAGGATGGGTGGTCGGTCTCACGACGGCTCTTCTGAGTGGACTGAAACGTGGTGGGAGA 706
|||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||
Sbjct 649 CAAGGATGGGTGGTCGATCTCATGATGGTTCTTCTGAATGGACTGAAACGTGGTGGGAGA 708
Query 707 AAAGTGACTGGACTGGATACAAAGAATTAGGTGTGGAGAAATCTGGTAAAAATGCCGAGG 766
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 709 AAAGTGACTGGACTGGATACAAAGAGTTAGGTGTGGAGAAATCTGGTAAAAATTCTGAGG 768
Query 767 GTGACACTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 826
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GTGACTCTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 828
Query 827 CGAGGATAGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACCGAAAATGCTGGTTGGT 886
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 829 CAAGGATTGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACTGAAAATGCTGGTTGGT 888
Query 887 ACGAGAAATGGTGGGAGAAGTATGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 946
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 889 ACGAGAAATGGTGGGAGAAGTACGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 948
Query 947 ATGGTAGACTAAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1006
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATGGTAGACTTAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1008
Query 1007 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1068
Query 1067 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1128
Query 1127 TATCACCTAACAGCGACCGTTGGTCAAGAACATGGGGAGAGGAACATTTTGGAAACGGAA 1186
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1129 TATCACCTAACAGCGACCGTTGGTCAAGAACGTGGGGAGAGGAACACTTTGGAAACGGAA 1188
Query 1187 AGGTTCACAAGTACGGAAAGAGTACGACAGGAGAAAGCTGGGACATAGTCGTGGATGAAG 1246
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1189 AGGTTCACAAGTACGGAAAGAGTACCACAGGAGAAAGCTGGGACATAGTGGTGGATGAAG 1248
Query 1247 AAACATACTACGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1306
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AAACATACTATGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1308
Query 1307 AGTTGCTCTCAATCCAGCCCCGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1366
||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AGTTGCTTTCGATCCAACCACGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1368
Query 1367 GACCATCTCCGCCTCCTGAACCTGACCAACCCCCTGACGAACCACAATGACACCACATCT 1426
| |||||||| |||||||| ||||||| |||||||||| ||||||||||||| |||||||
Sbjct 1369 GGCCATCTCCACCTCCTGAGCCTGACCTACCCCCTGACCAACCACAATGACATCACATCT 1428
Query 1427 GTTTGTTTAGCTTATTTAGCATAATAACCTTTTTGCTTTGTCATTTTTTCGATAAATTTA 1486
|||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 1429 GTTTGTTTAGCTTATT-AGCGTAATAGCCTTTTTGCTTTATCATTTTTTCGATAAATTTA 1487
Query 1487 GAATGTTGTGAATTATGGGTTTATATGATATAATTCTTGATCCA 1530
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1488 GAATGTTGTGAATTATGGGTG-AGATGATATAATTCTTGATCCA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5