BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473747 Length=1758 Score E Sequences producing significant alignments: (Bits) Value AT1G42970.1 | Symbols: GAPB | glyceraldehyde-3-phosphate dehydr... 2793 0.0 AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehy... 442 6e-123 > AT1G42970.1 | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127381-16129843 FORWARD LENGTH=1774 Length=1774 Score = 2793 bits (1512), Expect = 0.0 Identities = 1686/1768 (95%), Gaps = 19/1768 (1%) Strand=Plus/Plus Query 1 TCCCGATTTGTATCTTACCTACATAATAACCACATATTTCTTTGCTTCACTTTGAACCAT 60 |||| || |||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1 TCCCCATATGTATCTTACCTACATAATAGCCACATATTACTTTGCTTCACTTTGAACCAT 60 Query 61 TGGTTGCTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGTTGGTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120 Query 121 AACTGATCAGTAGCATTCGTAGA---TT-CTTCTTGT-TTCACTTGCAGCTATGGCCACA 175 ||||||||| |||||||| |||| || |||||||| ||||||||||||||||||||| Sbjct 121 AACTGATCACTAGCATTCCTAGATTTTTCCTTCTTGTGATCACTTGCAGCTATGGCCACA 180 Query 176 CATGCAGCTCTCGCCGTCTCCAGAATCCCGGTCACACAGAGACTGCAGTCTAAGAGTGCC 235 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 181 CATGCAGCTCTCGCCGTCTCAAGAATCCCGGTCACACAGCGACTGCAGTCTAAGAGTGCC 240 Query 236 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTTGCTGAATTCTCCGGT 295 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTCGCTGAATTCTCCGGT 300 Query 296 CTGCGTATGAGTAGTAACGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 355 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGCGTATGAGTAGTATCGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 360 Query 356 ATCCCCAAGGCTGTGACAACATCCACTCCTGTTAGAGGAGAGACAGTGGCCAAACTGAAG 415 ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 361 ATCCCTAAGGCTGTGACAACATCAACTCCTGTTAGAGGAGAGACAGTGGCGAAACTGAAA 420 Query 416 GTTGCGATTAACGGGTTCGGACGGATTGGTAGGAACTTCCTCAGGTGTTGGCATGGTCGT 475 |||||||||||||| || ||| |||||||||||||||| || |||||||||||||||||| Sbjct 421 GTTGCGATTAACGGTTTTGGAAGGATTGGTAGGAACTTTCTTAGGTGTTGGCATGGTCGT 480 Query 476 AAGGACTCTCCTCTCGAAGTTGTTGTGCTTAATGACAGTGGTGGTGTCAAGAATGCATCC 535 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 481 AAAGACTCTCCTCTCGAAGTTGTTGTACTTAACGACAGTGGTGGTGTCAAGAATGCATCC 540 Query 536 CATTTGCTCAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 595 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CACTTGCTTAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 600 Query 596 AATGAAACTATCAGCGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 655 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AATGAAACTATTAGTGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 660 Query 656 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 720 Query 716 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCTGGAGCCTCGAAAGTGATCATCACTGCA 775 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 721 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGAAAGTTATCATCACTGCA 780 Query 776 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTGTGGGCGTCAATGAGCAAGACTATGGT 835 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 781 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTATGGGAGTCAATGAGCAAGACTATGGT 840 Query 836 CACGACGTCGCTAACATCATTAGCAATGCATCTTGCACCACCAATTGTTTGGCACCCTTT 895 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 841 CACGATGTCGCTAACATTATTAGCAATGCATCTTGCACCACCAACTGTTTGGCACCTTTT 900 Query 896 GCTAAAGTCTTGGATGAAGAATTTGGTATCGTCAAGGGAACAATGACAACCACACACTCT 955 |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 901 GCTAAAGTCTTGGATGAAGAATTTGGAATTGTCAAGGGGACAATGACAACCACACACTCC 960 Query 956 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1020 Query 1016 GCAGCACTGAACATAGTGCCTACCAGCACAGGTGCAGCCAAGGCGGTCTCATTAGTGTTG 1075 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1021 GCAGCACTGAACATAGTGCCTACCAGCACAGGAGCAGCCAAGGCGGTGTCATTAGTGTTG 1080 Query 1076 CCGCAGCTGAAGGGTAAACTCAACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1135 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1081 CCGCAGCTGAAGGGTAAACTTAACGGCATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1140 Query 1136 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGACGTGAACGAG 1195 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1141 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGATGTGAACGAG 1200 Query 1196 GCCTTCAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGTGACGCCCCT 1255 ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 1201 GCCTTTAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGCGATGCGCCT 1260 Query 1256 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGATTCTTCCCTCACT 1315 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1261 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGACTCGTCCCTCACT 1320 Query 1316 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1380 Query 1376 AGCCAAAGAGTAGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGAGAAAGCT 1435 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1381 AGCCAAAGAGTGGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGCGGAAGCT 1440 Query 1436 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCCGATGAGGAATGC 1495 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1441 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCTGATGAGGAATGC 1500 Query 1496 AAAGTCTATGAATGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1555 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 AAAGTCTATGACTGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1560 Query 1556 TTGTATCATGAGTTA-TTATTCGAAATTGTATTATGCATACCTCTTTGTTTTTCTCATAA 1614 ||||||||||||||| ||||||||||| ||| ||||||||| | | ||||||||||||| Sbjct 1561 TTGTATCATGAGTTACTTATTCGAAATCGTACTATGCATAC-T-T--GTTTTTCTCATAA 1616 Query 1615 GATTTTCTTGTCTGATGAGCAACTATATGTTAAGACTGATGAGAAATGTATTTGAGAA-- 1672 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 1617 GATTTTCTTGTCTGATGAACAACTATATGTTAAGACTGA-GAGAATTGTATTTGAGAAAT 1675 Query 1673 --CCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAACaaaa 1730 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1676 AACCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAAGAAA- 1734 Query 1731 aaaTTGTTTAATTTGGTTTACaaaaaaa 1758 |||||| |||||||||||||| ||| Sbjct 1735 ---TTGTTTGATTTGGTTTACAAATAAA 1759 > AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehydrogenase A subunit 2 | chr1:4392450-4394400 REVERSE LENGTH=1501 Length=1501 Score = 442 bits (239), Expect = 6e-123 Identities = 781/1032 (76%), Gaps = 79/1032 (8%) Strand=Plus/Plus Query 403 GGCCAA-ACTGAAGGTTGCGATTAACGGGTTCGG-ACGGATTGGTAGGAACTTCCTCAGG 460 |||||| | | ||||| || || || |||||||| | ||||||||||||||||| | ||| Sbjct 303 GGCCAAGA-TAAAGGTAGCCATCAATGGGTTCGGTA-GGATTGGTAGGAACTTCTTGAGG 360 Query 461 TGTTGGCATGGTCGTAAGGACTCTCCTCTCGAAGTTGTTGTGC-TTAATGACAGTGGTGG 519 ||||||||||||||||||||||||||||| || || ||||| | |||| |||| |||||| Sbjct 361 TGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGT-CATTAACGACACTGGTGG 419 Query 520 TG-TCAAGAATGCATCCCATTTGCTCAAGTATGACTCCA-TGCTTGGAACCTTCAAGGCT 577 || | || || ||||| ||| | ||||| || ||||| | | ||||||| ||| | ||| Sbjct 420 TGTTAAACAA-GCATCACATCTCCTCAAATACGACTCAACT-CTTGGAATCTTTGACGCT 477 Query 578 GAAGTGAAA-ATTGTGGACAATGAAACTATCAGC-GTTGATGGTAAGCTCATCAAAG-TT 634 || || ||| || ||| | | | || || | |||||||| ||| ||||| ||| || Sbjct 478 GATGTCAAACCTTCAGGAGACT-CAGCTCTC-TCTGTTGATGGAAAGATCATC-AAGATT 534 Query 635 GTCTC-CAACAG-AGACCC-TCTTAAGCTTCCATGGGCTGAGCTCGGCATTGACATT-GT 690 || || | | | | |||| || ||| || || |||| || || ||||||||| || || Sbjct 535 GTATCTGATC-GTA-ACCCATC-TAATCTCCCCTGGGGGGAACTAGGCATTGAC-TTAGT 590 Query 691 TATCGAGGGAACAGGAGTGTTTGTTGA-TGGGCCAGGAGCAGGGAAGCATATCCAAGCTG 749 |||||| ||||| |||||||||||||| | | | || || |||||||| | || |||| Sbjct 591 TATCGAAGGAACCGGAGTGTTTGTTGACAGAGAC-GGTGCTGGGAAGCACCTTCAGGCTG 649 Query 750 GAGCCTCGAAAGTGATCATCACTGCACCAGCCAAAGGTGCTGATATCCCTACCTATGTTG 809 ||||| ||| || | ||||||||||| | ||| | | ||| ||||| || ||||| | Sbjct 650 GAGCCAAGAAGGTTCTTATCACTGCACCTG-GAAAAG-G-TGACATCCCAACTTATGTCG 706 Query 810 TGGGCGTCAATGAGCAAG-ACTATGGT-CA-CGACGTCGCTAAC-ATCATTAGCAATGCA 865 | || |||||| || | ||| | | || | | | | | || ||||| |||||||| Sbjct 707 TTGGTGTCAAT--GC-TGAACT-T--TACAGCCATGAAGAT-ACGATCATCAGCAATGCG 759 Query 866 TCTTGCACCACCAATTGTTTGGCACCCTTTGCT-AAAG-TCTTGGATGAAG-AATTTGGT 922 ||||| || || || ||| | || || || | | || | |||| || || ||||||| Sbjct 760 TCTTGTACTACTAACTGTCTCGCTCCATTCG-TCAAGGTTCTT-GA-CCAGAAATTTGGG 816 Query 923 ATCGTCAAGGGAACAATGACAACCACACACTCTTACACCGGAGACCAAAGGCTT-CTAGA 981 ||| | ||||| ||||||||||| || ||||| ||||| || ||||||||| || |||| Sbjct 817 ATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGG-TTGTTAGA 875 Query 982 TGC-ATCACACAGGGACCTAAGGCGTGCAAGAGCCGCAGCACTGAACATAGTGCCTACCA 1040 ||| | | ||| | || |||||| | |||||||| ||||| ||||||| || || | || Sbjct 876 TGCGAGC-CACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTCC-AACA 933 Query 1041 GC-ACAGGTGCAGCCAAGGC-G-GTCTCATTAGTG-TTGCCGCAGCTGAAGGGTAAACTC 1096 | ||||| |||||||| || | | ||| || ||| || || | || || || ||||| Sbjct 934 TCTACAGGAGCAGCCAAAGCTGTGGCTC-TT-GTGCTT-CCTAACCTCAAAGGAAAACTT 990 Query 1097 AACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCAGTGGTTGACCTT-GTTAT-AA 1154 ||||| |||||| | ||||||||||| |||||||| ||||||||||| ||| || | | Sbjct 991 AACGGAATTGCATTGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCGTGCA 1049 Query 1155 ACGT-TGAGAAG-AAAGGTTTGACAGCAGAGGACGTGAACGAGGCCTTCAGAAAAGCCGC 1212 | || | ||| ||| |||| | | | | || || || | || |||||| | || || Sbjct 1050 A-GTCT-CCAAGAAAACTTTTG-CTG-A-A-GAAGTCAATGCTGCTTTCAGAGATGCAGC 1103 Query 1213 T-A-ATGGACCGATGAAAGGCAT-TTTAGACGTTTGTGACGCCCCTCTTGTCTCTGTTGA 1269 | | | || | | ||||| || || ||||| ||||| | ||||||||||||||||| Sbjct 1104 TGAGAAAGA--GCTTAAAGGTATCCTT-GACGTCTGTGATGAGCCTCTTGTCTCTGTTGA 1160 Query 1270 CTTCAGGTGCTCTGATGTCTC-TACCACCATTGATTCTTCCCTCACTATGGTTATGGGTG 1328 |||||||||||||||||| || | |||| ||||||||||||||||| ||||||||||| | Sbjct 1161 CTTCAGGTGCTCTGATGTATCCT-CCACTATTGATTCTTCCCTCACAATGGTTATGGGAG 1219 Query 1329 ATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTACAGC-CAAAGAGTA 1387 |||||||||| || ||| ||||||||||||| || || ||||||||| | || ||||| Sbjct 1220 ATGATATGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACT-CACAGAGAGTC 1278 Query 1388 GTGGATTTGGCT 1399 || ||||||||| Sbjct 1279 GTTGATTTGGCT 1290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86947343940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5