BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473757 Length=1447 Score E Sequences producing significant alignments: (Bits) Value AT1G43170.1 | Symbols: ARP1, emb2207, RPL3A, RP1 | ribosomal pr... 2298 0.0 > AT1G43170.1 | Symbols: ARP1, emb2207, RPL3A, RP1 | ribosomal protein 1 | chr1:16266720-16268870 FORWARD LENGTH=1496 Length=1496 Score = 2298 bits (1244), Expect = 0.0 Identities = 1385/1453 (95%), Gaps = 10/1453 (1%) Strand=Plus/Plus Query 1 AAACTAGGGTTTTAAAGATCATTTCTCTCTTGCAGTCC-CATCGTTGGAGCTTAGAAGCC 59 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 AAACTAGGGTTTTAAAGCTCATTTCTCTCTTGCAGTCCTCATCGTTGGAGCTTAGAAGCC 60 Query 60 GTCGGCACAAGTAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACAT 119 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCGGCACAAGAAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACAT 120 Query 120 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCG 180 Query 180 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 240 Query 240 GGTATGACTCACATTGTCAGAGAAGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAG 299 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 241 GGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAAGCTTCACAAGAAGGAG 300 Query 300 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTTGTTGTTGGAGTTGTTGCC 359 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCC 360 Query 360 TATGTGAAGACTCCGAGAGGTTTGAGGTCTTTGAACACTGTTTGGGCACAGCATTTGAGT 419 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TATGTGAAGACTCCTAGAGGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGT 420 Query 420 GAGGAGGTTAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 479 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 480 Query 480 GGGTACGCTAAGCAGTATGAAAGTGAGGAGGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 539 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 481 GGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 540 Query 540 AAGATGAAGAAATACGCAACTGTTATCCGTGTTTTGGCCCACACTCAGATCAGGAAGATG 599 ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct 541 AAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGATCAGGAAGATG 600 Query 600 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 660 Query 660 GCCCAGAAGGTCGACTTTGCCTACAGCTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 719 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 661 GCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 720 Query 720 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTACGAAGGT 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGT 780 Query 780 GTTGTTACCCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGGGGTCTGCGTAAG 839 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 781 GTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAG 840 Query 840 GTTGCTTGTATCGGTGCGTGGCATCCTGCTAGAGTGTCTTACACTGTTGCTAGGGCTGGT 899 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 841 GTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGCTGGT 900 Query 900 CAGAATGGTTACCATCACCGTACTGAGCTGAACAAGAAGATTTACAGGTTGGGCAAGGTT 959 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 901 CAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTT 960 Query 960 GGTACTGAGGCACATTCAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1019 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGTACTGAGGCACACACAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1020 Query 1020 ATGGGAGGATTCCCACACTACGGTGTGGTGAAGGATGATTACTTGATGATTAAGGGGTGC 1079 |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 1021 ATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGC 1080 Query 1080 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTACTCACCCAGACTTCC 1139 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1081 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCC 1140 Query 1140 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTCATTGACACCGCCTCCAATGGGGGACAT 1199 |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct 1141 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACAT 1200 Query 1200 GGTCGCTTCCAGACCACCCTGGAGAAGATGAGGTTTTACGGTCGTACCAAGAATTAAGAG 1259 ||||||||||||||| |||| |||||||||||||||||| ||| || ||| |||||| Sbjct 1201 GGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAG 1260 Query 1260 TTGTTTTATCGCAATTCTTCTTAGAAAGTTTTATGTTTTGGTTATCTGTTGCTACTTGTC 1319 |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| || Sbjct 1261 TTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTT-GGTTATCTGTTGCTACTTATC 1319 Query 1320 TCAGAGAGATGTTATCCTTAAAACAATGCTATGCAGTTTTCTTTTG-TTTTAGTTTGTTA 1378 ||||||| |||||||||| |||||||| |||| |||||||||||| ||||||||||||| Sbjct 1320 TCAGAGA--TGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGCTTTTAGTTTGTTA 1377 Query 1379 CATTTTTGGAAGACAAAT-GATTTGCTTCTCAAGTTTTGTGACTTTTGATGTGTT-T--A 1434 | |||||||||| ||| |||||||||||||||||||| |||||| |||||||| | | Sbjct 1378 CTTTTTTGGAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT-GATGTGTTCTTTA 1436 Query 1435 TCATTTATGAAAA 1447 ||||||||||||| Sbjct 1437 TCATTTATGAAAA 1449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71334974445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5