BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473798 Length=1991 Score E Sequences producing significant alignments: (Bits) Value AT1G44100.1 | Symbols: AAP5 | amino acid permease 5 | chr1:1676... 2455 0.0 > AT1G44100.1 | Symbols: AAP5 | amino acid permease 5 | chr1:16764405-16767685 REVERSE LENGTH=2151 Length=2151 Score = 2455 bits (1329), Expect = 0.0 Identities = 1575/1693 (93%), Gaps = 20/1693 (1%) Strand=Plus/Plus Query 263 CTTCTTCTGGTC-TaaaaaaaTTCAAGATCTAAACGAGAAGaa-aaaaaaCAAGTAAAAA 320 |||||||||||| ||||||||||||||||||| ||||||| || | ||||||||| |||| Sbjct 324 CTTCTTCTGGTCTTAAAAAAATTCAAGATCTATACGAGAA-AACACAAAACAAGT-AAAA 381 Query 321 CTTTTTCAACCGTTTTTCCTGTCGGTAACGTTTGGATTTTTATT-GTAAATTTTGGTCTT 379 |||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||| Sbjct 382 CTTTTTCAACCGTTTTTCCTGTCGGTAAAGTTTGGATTCTTCTTAGTAAATTTTGGTCTT 441 Query 380 -TTGTC-AAGAAGAAGAAGAAGATGGTCGTTAAGAATGTTCAAGATTTGGATGTTCTTCC 437 ||||| | || |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 442 ATTGTCGACCAA-AAGAAGAAGATGGTCGTTCAGAATGTTCAAGATTTGGATGTTCTTCC 500 Query 438 GAGGA-ATAGCTCCGATTTATTCGATGACGATGGTCGTCCCAAGCGAACCGGGACGGTGT 496 || | ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 501 GA-AACATAGCTCGGATTCATTCGATGATGATGGTCGTCCCAAGCGAACCGGGACGGTGT 559 Query 497 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 619 Query 557 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGACTATGTTACTCTTTTCTTTCG 616 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 620 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGGCTATGTTACTCTTTTCTTTCG 679 Query 617 TTACTTATTACACATCTACCCTCCTCTGTTCTTGTTACCGTTCCGGTGACTCTGTTTCCG 676 |||||| ||||||||||||||| ||||||||||||||||| || |||||||||||| ||| Sbjct 680 TTACTTTTTACACATCTACCCTTCTCTGTTCTTGTTACCGATCTGGTGACTCTGTTACCG 739 Query 677 GCAAAAGAAACTACACTTACATGGACGCTATTCACGCCAACCTCGGTGGCATTAAGGTGA 736 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 740 GCAAAAGAAACTACACTTACATGGACGCTATTCACTCCAACCTCGGTGGGATTAAGGTGA 799 Query 737 AATTATGTGGAGTTGTGCAATATCTTAATCTCTTTGGTACTGCAATTGGATACACTATTG 796 || |||||||||||||||||||| ||||||| |||||||| ||||||||||| || |||| Sbjct 800 AAGTATGTGGAGTTGTGCAATATGTTAATCTATTTGGTACAGCAATTGGATATACAATTG 859 Query 797 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGAGGAA 856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 860 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGACCAA 919 Query 857 ATCATCCTTGTCATGTGAATGGAAATGTTTACATGATTGCATTCGGTGTTGTACAAATCA 916 || ||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||| Sbjct 920 ATGATCCTTGTCATGTTAATGGAAATGTTTACATGATTGCGTTTGGTATTGTACAAATCA 979 Query 917 TATTCTCTCAGATTCCGGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 976 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 980 TATTCTCTCAGATTCCTGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 1039 Query 977 TGTCTTTTGGTTATTC-GACCATCGGGCTTGGCCTGGGTGTCTCTAGAGTGGTAGAGAAC 1035 ||||||||| |||||| | |||| || |||||||| |||||||||| ||||||||||||| Sbjct 1040 TGTCTTTTGCTTATTCTG-CCATTGGACTTGGCCTTGGTGTCTCTAAAGTGGTAGAGAAC 1098 Query 1036 AAAGAAATTAAAGGTACTCTCACTGGAGTCACTGTTGGGACAGTGACACCGAGTGGGACA 1095 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1099 AAAGAAATTAAAGGTAGTCTCACTGGAGTCACTGTTGGGACAGTGACACTGAGTGGGACA 1158 Query 1096 GTGACACCGACGCAGAAAATTTGGAGAACATTTCAGTCTCTTGGAAACATTGCGTTTGCT 1155 |||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1159 GTGACATCGTCGCAGAAAATATGGAGAACATTTCAGTCTCTTGGCAACATTGCGTTTGCG 1218 Query 1156 TACTCTTACTCGATGATTCTCATTGAAATTCAGGACACCGTAAAATCACCGCCAGCAGAA 1215 ||||||||||||||||||||||| |||||||||||||| || ||||||||||| || ||| Sbjct 1219 TACTCTTACTCGATGATTCTCATCGAAATTCAGGACACGGTGAAATCACCGCCTGCCGAA 1278 Query 1216 GTAAACACTATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACAACAATCTTCTACATG 1275 |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1279 GTAAACACGATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACTACAGTCTTCTACATG 1338 Query 1276 CTCTGTGGCTGTGTAGGGTATGCAGCATTTGGGGATACCGCACCCGGAAATCTCCTCGCT 1335 || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1339 CTATGTGGCTGTGTAGGGTATGCAGCATTTGGGGATAACGCACCCGGAAATCTCCTCGCT 1398 Query 1336 AATGGAGGGTTCAGAAACCCATTTTGGTTGCTTGACATTGCCAATCTCGCTATAGTGATC 1395 |||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1399 CATGGAGGGTTTAGAAACCCATATTGGTTGCTTGACATTGCTAATCTCGCTATAGTGATC 1458 Query 1396 CATCTAGTCGGAGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTTGTCGAGAAGGAA 1455 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1459 CATCTAGTCGGTGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTCGTCGAGAAGGAA 1518 Query 1456 GCCGCTAGGAGGTTTCCAGAGAGCAAATTTGTCACAAATGAGATCAAGATCCAACTCTTT 1515 ||| |||||||||||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct 1519 GCCTCTAGGAGGTTTCCAGAGAGCGAATTCGTCACAAAAGAGATCAAGATCCAACTCTTC 1578 Query 1516 CCGGGGAAACCCTTCAACTTGAACCTCTTCAGGCTCGTATGGAGGACAATCTTCGTGATG 1575 |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1579 CCGGGGAAGCCCTTTAACTTGAATCTCTTCAGGCTCGTATGGAGGACGTTCTTCGTGATG 1638 Query 1576 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTTCTTGGTCTTTTGGGG 1635 |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| Sbjct 1639 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTAGTCGGTCTCTTGGGG 1698 Query 1636 GCCATCGGTTTTTGGCCTTTAACGGTTTACTTCCCGGTGGAAATGTACATTGTACAGAAG 1695 ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct 1699 GCCATTGGTTTTTGGCCTTTAACGGTTTATTTCCCAGTGGAAATGTACATTGCACAGAAG 1758 Query 1696 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTAAGTCTGGCCTGTCTT 1755 |||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||| Sbjct 1759 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTGAGTGTGACATGTCTT 1818 Query 1756 TTTGTATCCGTAGCCGCGGCTGCAGGATCTGT-AGTTGGCATTGTTAGTGATCTCAAGAT 1814 ||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| | Sbjct 1819 TTTGTGTCCGTAGCCGCGGCCGCGGGATCTGTTA-TTGGCATTGTTAGTGATCTCAAGGT 1877 Query 1815 CTACAAACCTTTCCAGTCAGATTTCTAAGATCATACGG-AAAATTAAACTCCTACAAAAA 1873 |||||||||||||||||| || |||| ||||||||||| |||| ||||||||| | |||| Sbjct 1878 CTACAAACCTTTCCAGTCTGAATTCTGAGATCATACGGGAAAAATAAACTCCTGCTAAAA 1937 Query 1874 GGCTTAAGATTAGAATTGAATGTTTTAATGTTATCTTTGTATTAGTGAAATTAACTTTGT 1933 || |||||||||||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 1938 GGGTTAAGATTAGAATTGAATGTTTTAATGTCATATTTGTATTAGT----T-AACTTTGT 1992 Query 1934 GTAAGTGCTCAAT 1946 ||||||| ||||| Sbjct 1993 GTAAGTGTTCAAT 2005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98644070925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5