BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473812
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygena... 3092 0.0
> AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
family protein with Rieske [2Fe-2S] domain | chr1:16848359-16851224
REVERSE LENGTH=1988
Length=1988
Score = 3092 bits (1674), Expect = 0.0
Identities = 1888/1992 (95%), Gaps = 12/1992 (1%)
Strand=Plus/Plus
Query 1 AAAAGATAAAATCTCAAACTTTCTTCTAAAATCCGttttctatttttcttctctcttttt 60
|||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| | ||
Sbjct 2 AAAAGATAAAATCTCAAACTTTCTTCTAAAATTCGTTTTCCATTTTTCTTCACTC-TCTT 60
Query 61 tcCGGTGACGCCATGAACGCCGCCGTGTTTAGTGCTTCTGCTTTATCTCTTCCTATCTCC 120
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 TCCGGTGACGCCATGAACGCCGCCGTGTTTAGTCCTTCTGCTTTATCTCTCCCTATCTCC 120
Query 121 TTCTCTAAAACAAGATCATCTTATCTCTCCAGAAAGAAGGGAGTGAAAGGAGAATTCAGG 180
||||||||||| |||| |||| |||||||||||||||||| |||||||||||||| |||
Sbjct 121 TTCTCTAAAACCCGATCCTCTTTTCTCTCCAGAAAGAAGGGCGTGAAAGGAGAATTTAGG 180
Query 181 GTATTTGCTGTATTTGGTGATGAGAGTGGTTTACTTGAGAAGAAGAGTCAATGGAGACCT 240
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 181 GTATTTGCTGTGTTTGGTGATGAGAGTGGATTAGTTGAGAAGAAGAGTCAATGGAGACCT 240
Query 241 TTGTTTGATGTGGAGGATCCTAGATCAAAAGCTCCTCCATATAAAGGAAAGTTTTTAGAT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TTGTTTGATGTGGAGGATCCTAGATCAAAAGCTCCTCCTTATAAAGGAAAGTTTTTAGAT 300
Query 301 GTTAATCAAGCTATTGAAGTTGCTAGATTTGATATTCAATACTTGGATTGGCGTGCTCGT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGT 360
Query 361 CAAGATCTTCTTACCATCATGATTCTTCATGACAAGGTTGTTGATGTACTTAATCCTCTA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGATCTTCTTACCATTATGATTCTTCATGACAAGGTTGTTGATGTACTTAATCCTCTA 420
Query 421 GCTCGTGAGTACAAGTCGATCGGCACTGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAA 480
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 GCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAA 480
Query 481 TTGTCGAAAGCACACCAACAGGTTCATATATCTGAAGCACGGGTTTCAACTGCTTTAGAC 540
|| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 481 TTATCGAAAGCACACCAACAGGTTCATATATCTGAAGCAAGGGTTTCGACTGCTTTAGAC 540
Query 541 AAGTTAGCTCACATGGAAGAATTGGTTAATGATAGGTTGTTACCTGGCAGAGTTGTAACG 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGTTAGCCCACATGGAAGAATTGGTTAATGATAGGTTGTTACCTGGCAGAGTTGTAACG 600
Query 601 GAATTAGATAAACCCTCCACTTCAGCCACTGCTTCTGCTGTCGAGTTAGATAGGGAAAAG 660
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 GAATTAGATAAACCCTCCTCTTCAACCACTGCTTCTGCTGTCGAGTTAGATAGGGAAAAG 660
Query 661 ACAAACACGGGTGCGAAAAGCTTGAATGTTTCTGGTCCGGTTCCGCCTTATAGTCCACAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAAACACGGGTGCGAAAAGCTTGAATGTTTCTGGTCCGGTTCCGCCTTATAGTCCACAC 720
Query 721 TTGAAGAACTTTTGGTATCCCGTTGCTTTCACTGCAGATCTCAAGCATGACACAATGGTA 780
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TTGAAGAATTTTTGGTATCCCGTTGCTTTCACTGCAGATCTCAAGCATGATACAATGGTA 780
Query 781 CCAATTGAATGCTTTGAACAACCATGGGTTATATTTAGGGGTGAAGACGGGAAACCAGGA 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CCAATTGAATGCTTTGAACAACCATGGGTTATCTTTAGGGGTGAAGACGGGAAACCAGGA 840
Query 841 TGTGTACGGAATACATGTGCGCATAGAGCCTGTCCTCTTGATCTTGGCACCGTGAACGAG 900
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 841 TGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAG 900
Query 901 GGTCGTATTCAATGTCCTTACCACGGATGGGAATACTCAACCGATGGAGAATGTAAGAAG 960
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 GGACGTATTCAATGTCCGTACCATGGATGGGAATACTCAACCGATGGAGAATGTAAGAAG 960
Query 961 ATGCCCTCTACAAAGCTACTAAAGGTGAAGAT-AAAGTCGTTGCCTTGTCTTGAACAAGA 1019
||||| ||||||||| |||| ||||||||||| ||| || || |||||||||||||||||
Sbjct 961 ATGCCGTCTACAAAGTTACTGAAGGTGAAGATCAAA-TCATTACCTTGTCTTGAACAAGA 1019
Query 1020 AGGCATGATCTGGATCTGGCCTGGCGATGAGCCACCTGCACCTACACTACCATGTTTACA 1079
||| ||||||||||| ||||| || ||||||||||||||||||| ||| || | ||||||
Sbjct 1020 AGGTATGATCTGGATTTGGCCCGGTGATGAGCCACCTGCACCTATACTTCCTTCTTTACA 1079
Query 1080 GCCTCCATCAGGGTTTTTAATCCATGCCGAGCTTGTTATGGATCTCCCGGTGGAACACGG 1139
||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct 1080 GCCTCCATCAGGGTTTTTAATTCATGCTGAGCTTGTAATGGACCTCCCGGTGGAACACGG 1139
Query 1140 TTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTTACTCATACATCCACTTT 1199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTCACTCATACATCCACTTT 1199
Query 1200 TGCAAAAGGCTGGAGTGTCCCAAGCTTGGTGAAGTTCTTAACACC-ATCCTCAAGTCTCC 1258
|||||||||||||||||||||||| ||||||||||| |||||||| | |||| ||||||
Sbjct 1200 TGCAAAAGGCTGGAGTGTCCCAAGTTTGGTGAAGTTTTTAACACCTA-CCTCGGGTCTCC 1258
Query 1259 AAGGATACTGGGATCCGTATCCAATCGATATGGAATTTAAACCTCCTTGTATTGTTTTAT 1318
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1259 AAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTAT 1318
Query 1319 CGACAATCGGGATCTCCAAACCCGGGAAACTAGAAGGAAAAAGCACAAAGCAGTGTGCAA 1378
||||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1319 CGACAATCGGGATATCAAAACCCGGGAAACTAGAAGGCAAAAGCACACAGCAGTGTGCAA 1378
Query 1379 CACATCTTCATCAACTCCATGTCTGTTTACCTTCTTCCAAAAACAAGACAAGACTTCTAT 1438
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1379 CACATCTTCATCAACTCCATGTCTGTTTACCTTCTTCTAAAAACAAGACAAGACTTCTAT 1438
Query 1439 ACCGAATGTCACTAGACTTCGCTCCTATATTGAAGAATCTTCCATTCATGGAACATCTCT 1498
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1439 ACCGAATGTCACTAGACTTTGCTCCTATATTAAAGAATCTTCCATTCATGGAACATCTGT 1498
Query 1499 GGAGACATTTCGCTGAACAGGTCTTAAACGAAGATTTGCGACTAGTTATAGGACAGCAAG 1558
||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||||
Sbjct 1499 GGAGACATTTCGCTGAACAGGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAG 1558
Query 1559 AACGGATGCTGAATGGTGCAAACATATGGAATTTACCAGTTGCTTATGACAAGCTCGGAG 1618
|||||||| | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AACGGATGTTAAACGGAGCAAACATATGGAATTTACCAGTTGCTTATGACAAGCTCGGAG 1618
Query 1619 TCCGGTATAGACTATGGAGAAACGCGGTAGATCGTGGCGATGATAAACTACCCTTCTCCG 1678
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1619 TTCGGTATAGACTATGGAGGAACGCAGTAGATCGTGGCGATGATAAACTACCTTTCTCCG 1678
Query 1679 GCTAACTGTTATTGAAGAAATCTAATGGAAGTTTTTGCAGCTCCCCTTATTCACCAGCAA 1738
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1679 GCTAACTGTTATTAAAGAAATCTAATGGAAGTTTTTGCAGCTCC--TTATTCACCAGCAA 1736
Query 1739 CCTCAGAAAAGTGTAGGTTATTA-TCTGGTTCATTCTCACCGCAGAA-GAGCTTTGCCGA 1796
||||||| ||||||||||||||| ||||||| |||||||||| |||| ||||||||||||
Sbjct 1737 CCTCAGACAAGTGTAGGTTATTAATCTGGTTTATTCTCACCGAAGAAAGAGCTTTGCCGA 1796
Query 1797 GTAACA-ATCTGGAGTTTGTGGATTCATCTAGAAAAC-GATGAAACAAAGAACTTTTGCG 1854
|||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1797 GTAAAAGATCTGGAGTTTGTGGATTCATCTAAAAAACCGATGAAACAAAGAACTTTTGCG 1856
Query 1855 TAGATAAAAG-ACAACATCCACTGTAAATCAAAAGGAGATATATTGTTATTCATTTTTCC 1913
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1857 TAGATAAAAGGACAACATCCACTGTAAATCCAAAGGAGATATATTGTTATTCATTTTTCC 1916
Query 1914 CTGTGTACAGTTCACTTTCTATGAGAAATTGAATATCAGTTTTCCCCACTAAATTGATGT 1973
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1917 CTGTGTACAGTTCACTCTCTATGAGAAATTGAATATCAGTTTTCCCCACTAAACTAATGT 1976
Query 1974 CTTCTAAGAACC 1985
||||||||||||
Sbjct 1977 CTTCTAAGAACC 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98342867655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5