BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473850
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45249.3 | Symbols: ABF2 | abscisic acid responsive elements... 1631 0.0
> AT1G45249.3 | Symbols: ABF2 | abscisic acid responsive elements-binding
factor 2 | chr1:17165178-17167907 REVERSE LENGTH=1697
Length=1697
Score = 1631 bits (883), Expect = 0.0
Identities = 1107/1209 (92%), Gaps = 39/1209 (3%)
Strand=Plus/Plus
Query 1 GCTCAGCAGACAAAGTACCTAATCACCCAAACGAAGAACCAGACA-TTTG---------G 50
||||| |||||||| |||||||||||||||||||||||||| ||| |||| |
Sbjct 42 GCTCACCAGACAAACTACCTAATCACCCAAACGAAGAACCAAACATTTTGAAATTTTTTG 101
Query 51 GGCAAA-TACGAAGCACACGAATTTAGCATAAAGGT-AATGGGAATA-ATAGCTG-AGAT 106
|| ||| ||| |||||||||||||||||| |||| | | | | || | | | ||||
Sbjct 102 GGAAAATTACAAAGCACACGAATTTAGCAAAAAGATCCA-GTTATTAGGTGGAAGCAGAT 160
Query 107 TATTGGaaaaaaaaTGGATGGTAATATGAATTTGGGAAATGAGCCACCAGGAGATGGTGG 166
| || | | |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 161 T-TT-GTAGAAAAATGGATGGTAGTATGAATTTGGGGAATGAGCCACCAGGAGATGGTGG 218
Query 167 TGGTGGAGGAGGGTTGACTAGACAAGGTTCGATATACTCGTTGACGTTTGATGAGTTTCA 226
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TGGAGGTGGAGGGTTGACTAGACAAGGTTCGATATACTCGTTGACGTTTGATGAGTTTCA 278
Query 227 GAGCAGTTTAGGGAAAGATTTTGGGTCAATGAACATGGATGAGTTGTTAAAGAACATTTG 286
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 279 GAGCAGTGTAGGGAAAGATTTTGGGTCAATGAACATGGATGAGTTGTTAAAGAATATATG 338
Query 287 GAGTGCTGAAGAAACTCAAGCCATGGCTAGTGGTATGGTTCCAGTTGTTGGTGGAGGTCA 346
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 339 GAGTGCTGAAGAAACACAAGCCATGGCTAGTGGTGTGGTTCCAGTTCTTGGTGGAGGTCA 398
Query 347 AGAGGGTTTGCAGTTGCAGAGGCAAGGCTCGTTGACTCTGCCTCGAACGCTTAGTCAGAA 406
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGAGGGTTTGCAGCTGCAGAGGCAAGGCTCGTTGACTCTGCCTCGAACGCTTAGTCAGAA 458
Query 407 GACGGTTGATCAAGTTTGGAAAGATCTATCTAAAGTTGGAAATAGTAGAGGAGGAGGAAC 466
|||||||||||||||||||||||||||||| |||||||||| |||| ||| ||| ||||
Sbjct 459 GACGGTTGATCAAGTTTGGAAAGATCTATCCAAAGTTGGAAGTAGTGGAGTAGGGGGAAG 518
Query 467 AAACTTGTCTCAGGTGGCTCAGGCTCAGAGTCAGAGTCAGAGTCAGAGGCAACAAACGTT 526
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 519 TAACTTGTCTCAGGTGGCTCAGGCTCAGAGTCAGAGTCAGAGTCAGAGGCAGCAAACATT 578
Query 527 AGGTGAAGTAACTTTGGAGGAGTTTTTGGTCCGTGCAGGTGTTGT----GA-G-AG---A 577
|||||||||||||||||||||||||||||| ||||| |||||||| || | || |
Sbjct 579 AGGTGAAGTAACTTTGGAGGAGTTTTTGGTTCGTGCTGGTGTTGTGAGAGAGGAAGCTCA 638
Query 578 ----G--G--A-AGCTCAGATTGCTGAGAATAATAAAGGCGGTTACTTTGGTAATGATGC 628
| | | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 639 GGTTGCTGCAAGAGCTCAGATTGCTGAGAACAATAAAGGCGGTTACTTTGGTAATGATGC 698
Query 629 TAACACTGGTTTCTCTGTCGAGTTTCAGCAGCCTTCTCCACGAGTTGTTGCCGCTGGTGT 688
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CAACACAGGTTTCTCTGTCGAGTTTCAGCAGCCTTCTCCACGAGTTGTTGCCGCTGGTGT 758
Query 689 AATGGGAAATCTTGGTGCAGAGACTGCGAAT-CATTTACAGGTTCAAGGTTCTAGTTTGC 747
||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 759 AATGGGAAATCTTGGTGCAGAGACTGCAAATTC-TTTGCAGGTTCAAGGTTCTAGTTTGC 817
Query 748 CTCTGAATGTAAATGGAGCTAGATCAACATACCAGCAGCCGCAACAGCAACAACCAATCA 807
|||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 818 CTCTGAATGTGAATGGAGCTAGAACAACATACCAGCAATCGCAACAGCAACAGCCAATCA 877
Query 808 TGCCTAAGCAGCCTGGTTATGGTTATGGAACACAAATAGGTCAGCTTAATAGTCCTGGGA 867
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 878 TGCCTAAGCAGCCTGGTTTTGGTTATGGAACACAAATGGGTCAGCTTAATAGTCCTGGGA 937
Query 868 TAAGAGGTG-TGGGTCTTATGGGACTTGGAGATCAGTCTTTAACGAACAATATGGGCTTG 926
||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 938 TAAGAGGTGGTGG-TCTTGTGGGACTTGGAGATCAGTCTTTAACGAACAATGTGGGCTTT 996
Query 927 GTCCAAGGTGCTGCTGCTGCAATTCCTGGAGCTTTGGGCATTGGTGCTGTGTCGCCTGTT 986
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 997 GTCCAAGGTGCTTCTGCTGCAATTCCTGGAGCTTTAGGCGTTGGTGCTGTGTCGCCTGTT 1056
Query 987 ACACCATTGTCATCAGAAGGGATAGGGAAGAGTAATGGTGATTCTTCATCGCTCTCTCCG 1046
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1057 ACGCCATTGTCATCAGAAGGGATAGGGAAGAGTAATGGTGATTCTTCATCACTCTCTCCG 1116
Query 1047 TCTCCTTACATGTTTAATGGTGGTGTGAGAGGCAGAAAGAGTGGGACTGTGGAGAAAGTT 1106
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1117 TCTCCTTACATGTTTAATGGTGGTGTGAGAGGTAGAAAGAGTGGCACTGTGGAGAAAGTT 1176
Query 1107 GTAGAGAGAAGGCAAAGGAGAATGATAAAGAACCGAGAATCAGCTGCAAGGTCACGGGCC 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1177 GTAGAGAGAAGGCAAAGGAGAATGATAAAGAACCGAGAATCAGCTGCAAGGTCCCGGGCC 1236
Query 1167 AGAAAACAG 1175
|| ||||||
Sbjct 1237 AGGAAACAG 1245
Score = 588 bits (318), Expect = 6e-167
Identities = 369/393 (94%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 1176 GCTTACACCGTGGAGCTTGAAGCGGAAGTTGCAAAGTTAAAGGAAGAGAATGACGAGTTA 1235
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1279 GCTTACACCGTGGAGCTTGAAGCTGAAGTTGCAAAGTTAAAGGAAGAGAATGACGAGTTA 1338
Query 1236 CAACGAAAGCAGGCAAGGATCATGGAAATGCAAAAGGATCAGGAGATGGAGATGAGGAAT 1295
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1339 CAACGAAAGCAGGCAAGGATCATGGAAATGCAAAAGAATCAGGAGACGGAGATGAGGAAT 1398
Query 1296 CTTCTGCAAGGAGGACCAAAGAAAAAGCTGAGAAGGACAGAGTCAGGACCTTGGTGAATC 1355
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1399 CTTCTGCAAGGAGGTCCAAAGAAAAAGCTGAGGAGGACAGAGTCGGGACCTTGGTGAATC 1458
Query 1356 AATCAGTGC--TCATACTTAGTGTCTGTAGATAGAATCACATCCCACTTAGGTGTTT-AG 1412
||||| ||| ||||||||||| |||||||||| ||| ||||||||||||||||||| ||
Sbjct 1459 AATCAATGCCATCATACTTAGTTTCTGTAGATA-AATGACATCCCACTTAGGTGTTTTAG 1517
Query 1413 TTGAAGAAGACTTAATAGAAAAGAGCTTTCATCATTTATATTGTAAGCTCTCTCCATATA 1472
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1518 TTGAATTAGACTTAATAGAGAAGAGCTTTCATCGTTTATATTGTAAGCTCTCTCCATATA 1577
Query 1473 TGTTATGTTTTATACATACACAGGATCATCAGAATCACTTTTTCTTTAATTAGACCAAGA 1532
||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1578 TGTTATGTTTTTTACATACACAGGATCATCAGAATCTCTTTTGCTTTATTTAGACCAAGA 1637
Query 1533 -TTTTGTGTGTGTTTTCTCGTTGTTGTATGTCG 1564
|||||||||||||| ||||||||||| |||||
Sbjct 1638 ATTTTGTGTGTGTTT-CTCGTTGTTGTTTGTCG 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5