BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473855 Length=906 Score E Sequences producing significant alignments: (Bits) Value AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting c... 1445 0.0 > AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179302-17180530 FORWARD LENGTH=913 Length=913 Score = 1445 bits (782), Expect = 0.0 Identities = 869/911 (95%), Gaps = 6/911 (1%) Strand=Plus/Plus Query 1 AGAGTCAGAACAGAACACAAACGTAA--ACCaaaaaa-aaaaCAGAGCAAAATGGCCGTA 57 ||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| Sbjct 1 AGAGTCAGAACAGAACAAAAACGTAAGCAAAAAAAAATAAAACAGAGCAAAATGGCCGTA 60 Query 58 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCAACGTCGCGACACTTCATCCGTC 117 |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 61 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCATCGTCGTGACGCTTCATCCGTC 120 Query 118 ATAACAAGAAGAATCTCATCCGTCAGAGCCGCAGGAGGAGGCATCAACCCAACAGTGGCT 177 || |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 121 ATCACAAGAAGAATCTCATCCGTCAAAGCCGCAGGAGGAGGCATCAACCCAACGGTGGCT 180 Query 178 GTTGAACGTGCCACGTGGCTACCTGGCCTCAACCCTCCTCCTTATCTTGATGGAAAGTTA 237 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 181 GTTGAACGTGCCACGTGGCTACCTGGACTAAACCCTCCTCCTTATCTTGATGGAAATTTA 240 Query 238 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCAGAAAGTTTG-AGATG 296 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || || Sbjct 241 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCGGAAAGCTTGAAG-TG 299 Query 297 GTATGTTCAAGCAGAACTTGTTCATTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 356 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 GTATGTTCAAGCAGAGCTTGTTCACTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 359 Query 357 CTTCACCGATCTGCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 416 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTTCACTGATCTCCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 419 Query 417 AGCTGTCAAATTTGATTTTGCTAGCACAAAAACACTCATAGTTGTACAGTTTTTACTTAT 476 |||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||| Sbjct 420 AGCTGTGAAATTTGATTTTGCTAGTACAAAAACTCTCATAGTTGTACAGTTTCTACTTAT 479 Query 477 GGGGTTTGCTGAGACTAAAAGGTATGTGGATTATGTCTCTCCGGGCTCTCAAGCCAAAGA 536 ||||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| Sbjct 480 GGGGTTTGCTGAGACTAAAAGGTATATGGATTTTGTCTCTCCGGGATCACAAGCCAAAGA 539 Query 537 AGGATCTTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 596 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGGATCGTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 599 Query 597 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATATTAAAAATGCTCATGACTGGAA 656 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 600 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATGTTCAAAATGCTCATGACTGGAA 659 Query 657 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 719 Query 717 AGCCTCTGTGACTCACACTGGCCCTATCGATAACCTTGTCGAGCATCTCTCTAATCCATG 776 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 720 AGCCTCTGTGACTCACACTGGCCCTATTGATAACCTTGTTGAGCATCTCTCTAATCCATG 779 Query 777 GCATAAGACCATCATTCAAACCCTCTTCAGCTCTGCTTCTTAGGTACATTCTTTTGTAAC 836 ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| Sbjct 780 GCATAAGACCATCATTCAAACCCTCTTCACCTCTACATCTTAGGTACATTCTTTTGTAAT 839 Query 837 GAAAA-TTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 895 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAAAAATTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 899 Query 896 ATCTATTCTAA 906 |||| |||||| Sbjct 900 ATCTGTTCTAA 910 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44256283507 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5