BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473896
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47530.1 | Symbols: | MATE efflux family protein | chr1:174... 2353 0.0
> AT1G47530.1 | Symbols: | MATE efflux family protein | chr1:17451680-17454421
FORWARD LENGTH=1810
Length=1810
Score = 2353 bits (1274), Expect = 0.0
Identities = 1425/1499 (95%), Gaps = 6/1499 (0%)
Strand=Plus/Plus
Query 1 AAGCGAAGAAGAGAAACTAAAACAGAGC--TTCTCACATGGGAAAGGATAAGACTTTGCC 58
|||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 8 AAGCAAAGAAGAGAAACTAAAACAGAGCTTTTTTCACATGGGAAAGGATAAGACTTTGCC 67
Query 59 GTTGCTTGACCCTCGTGAACCACCGGAACTCTCCGGAACCAAATCGGCGTCGAAGGTATG 118
|||||||||||||||||| |||||||||||| |||||||||| |||||||| || |||||
Sbjct 68 GTTGCTTGACCCTCGTGAGCCACCGGAACTCACCGGAACCAAGTCGGCGTCAAAAGTATG 127
Query 119 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGCTAGCGGGACCAGCGATTTT 178
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 128 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGTTAGCAGGACCAGCGATTTT 187
Query 179 CACAGCCATAAGTCAATACTCTCTTGGAGCAT-TAACTCAGACTTTTTCTGGTCGTCTCG 237
||| ||||||||||||||||||||||| || | | ||||||||||| || || |||||||
Sbjct 188 CACTGCCATAAGTCAATACTCTCTTGGTGC-TCTCACTCAGACTTTCTCCGGCCGTCTCG 246
Query 238 GCGAACTTGAGCTCGCCGCCGTCTCTGTTGAGAACTCTGTTATCTCCGGTCTTGCCTTCG 297
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 247 GTGAACTTGAGCTCGCCGCCGTCTCAGTTGAAAACTCTGTTATCTCCGGTCTTGCCTTCG 306
Query 298 GTGTTATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGCGGACAAGCATATGGCGCGG 357
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 307 GTGTCATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGTGGACAAGCATATGGCGCGG 366
Query 358 GACAGATTAGGATGATGGGAATATATATGCAGCGTTCATGGGTCATTCTCTTTACCACTG 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 367 GACAGATTAGGATGATGGGAATATATATGCAACGTTCATGGGTCATTCTCTTTACTACTG 426
Query 418 CTTTGTGTTTGCTCCCCGTTTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 477
|||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTTTGTTTTTGCTTCCCGTCTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 486
Query 478 CTCCTCACATCTCTAAAGCCGCGGGGAAATTCGCATTGTGGATGATTCCGCAACTATTTG 537
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 487 CTCCTCACATCTCTAAAGCCGCGGGGAAGTTCGCATTGTGGATGATCCCGCAACTATTTG 546
Query 538 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTGCTTGTGA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 547 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTTCTTGTGA 606
Query 598 TGGCATGGATCTCTGGAGTGGTTTTAGTTATACACGCAGTGTTTAGCTGGCTCTTCATTC 657
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 607 TGGCTTGGATCTCTGGAGTGGTTTTAGTTATACATGCAGTTTTTAGCTGGCTCTTCATTC 666
Query 658 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCCATCACTCTCAATACCTCATGGTGGTTGA 717
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 667 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCTATCACTCTCAATACCTCGTGGTGGTTGA 726
Query 718 TTGTTATCGGTCAGCTTTTGTATATAC-TAATCACCAAATCAGACGGTGCGTGGACTGGA 776
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 727 TTGTTATTGGTCAGCTTTTGTATAT-CTTAATCACCAAATCAGACGGTGCGTGGACTGGA 785
Query 777 TTTTCTATGCTGGCGTTTCGGGACCTCTACGGATTTGTCAAACTTTCCTTAGCATCTGCT 836
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 786 TTTTCTATGCTAGCGTTTCGGGACCTCTATGGATTTGTCAAACTTTCCTTAGCCTCTGCT 845
Query 837 CTCATGCTTTGTTTGGAATTTTGGTACTTGATGATTCTGGTTGTGGTTACCGGTCTCCTT 896
|| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 846 CTTATGCTTTGTTTGGAGTTTTGGTACTTGATGGTTCTGGTTGTTGTTACCGGTCTCCTT 905
Query 897 CCTAATCCGTTGATACCAGTCGATGCCATTTCCATTTGCATGAACATAGAAGGGTGGACT 956
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 906 CCTAACCCGTTGATACCAGTCGATGCCATCTCCATTTGCATGAATATAGAAGGGTGGACT 965
Query 957 GCCATGATTTCAATCGGGTTTAACGCTGCGATAAGTGTGAGGGTATCGAACGAGCTGGGT 1016
||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 966 GCCATGATTTCGATCGGGTTTAACGCTGCGATTAGTGTGAGAGTATCGAATGAGCTGGGT 1025
Query 1017 GCGGGAAATGCAGCTTTAGCAAAATTCTCAGTGATAGTTGTCTCCATAACTTCAACTCTT 1076
|| ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1026 GCAGGAAACGCAGCGTTAGCCAAATTCTCAGTGATAGTCGTCTCCATAACTTCAACTCTT 1085
Query 1077 ATCGGGATTGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATTTTTTC 1136
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1086 ATCGGGATAGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATCTTTTC 1145
Query 1137 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1205
Query 1197 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCTGTTGGAGCTGGGTGGCAG 1256
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1206 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCGGTTGGAGCGGGGTGGCAG 1265
Query 1257 GCTCTGGTCGCATACGTGAACATTGCGTGCTATTACATTATCGGACTTCCTGCTGGTCTT 1316
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1266 GCTCTGGTTGCATACGTGAACATTGCGTGTTATTACATTATCGGACTACCTGCTGGTCTT 1325
Query 1317 GTTCTTGGATTCACACTAGACTTTGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1376
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1326 GTTCTTGGATTCACACTAGACCTCGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1385
Query 1377 ATTTGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 ATATGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1445
Query 1437 GCCGAGCAAGCCGAGAGTCGGGTTCAGAGATGGGGAGGAACAGCGCGGGAGTGATCAAC 1495
|| |||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 1446 GCTGAGCAAGCGGAGAGTCGAGTTCAGAGATGGGGAGGAACGGCGCAGGAGTGATCAAC 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5