BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473912 Length=1484 Score E Sequences producing significant alignments: (Bits) Value AT1G47310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1967 0.0 > AT1G47310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17342914-17344802 FORWARD LENGTH=1540 Length=1540 Score = 1967 bits (1065), Expect = 0.0 Identities = 1359/1500 (91%), Gaps = 24/1500 (2%) Strand=Plus/Plus Query 1 CCAGGCATGCTCATGTCATGTGAAACTTGCCACATCACTAAAATAATCGATATCGGAAAA 60 ||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 27 CCAGGCAGGCTCATGTCATGTGAATCTTGCCACATCACTAACATAATTAATATCGGAAAA 86 Query 61 CTTCAATGGGCGTTATCGTCATTTCCTTAAAAAGAGCCGCGAGACAGTCGACGGTTACGG 120 |||||||||| ||||||||||||||| |||||||| | ||||||| ||||||||||||| Sbjct 87 CTTCAATGGGTGTTATCGTCATTTCCCTAAAAAGAACAACGAGACAATCGACGGTTACGG 146 Query 121 CGGCGTAAACCTTATCGGACGAATGAAGATCTGCCGTTCTCCTTTCTCCATCGTACTCTC 180 ||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||||| Sbjct 147 CGGCGTAAACCTTATCGGACGAATGAAGATCTGTCGCTCTCCTTCCTCCGTCGTACTCTC 206 Query 181 TCTATTCATCCAAGTCCTTACTCTAGCCATAGCTCTCGATCCTTCGCAGCCAGACGAATC 240 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 207 TCTATTCATCCAAGTCCTTACTCTAGCCGTCGCTCTCGATCCTTCGCAGCCAGACGAATC 266 Query 241 CAACATCACCACAACACCGATTCTACAGGATGTGTTAAAGGAGATATCGGTGAAGCAGAA 300 |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 267 CAACATCACCGCAACACCGATTCTACAGGATGTGCTGAAGGAGATATCGGTGAAGCAGAA 326 Query 301 GTGGAATCTGGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 GTGGAATCTAGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 386 Query 361 GGGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTTGTATTTATCTTCCC 420 | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 387 GAGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTCGTATTCATCTTCCC 446 Query 421 TGATGAAGTAACTGATTGGAGAAGAAGCGGCGGAGGAAGAGATGTGGAGTTGCAGGAAGT 480 |||||| |||| |||||||||||||||||||| || || ||||| |||||||||||| | Sbjct 447 GGATGAAATAACAGATTGGAGAAGAAGCGGCGGGGGTAGTGATGTTGAGTTGCAGGAACT 506 Query 481 AGTTAGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGC---TTGTATTGAAAGGTCCATT 537 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 507 AGTTCGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGCCGCTTGTATTGAAAGGTCCATT 566 Query 538 TGAGCTACGAGTCGATGGCGATGATCATCTCTCGCTTTCGTTGCCGATGAACATTTCGCA 597 |||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||| || Sbjct 567 TGAGCTACTTGTCGATGGCAATGATCGTCTCTCGCTTTCGTTACCGATGAACATTTCACA 626 Query 598 CAACGGCTTAAAACGAGTGCTTGTGAGTGAAGGCATTTCAGTAGAAATAAGGGAAGCTCA 657 | ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 627 TAGCGGTTTAAAACGAGTTCTTGTGAGTGAGGGCATCTCAGTAGAAATAAGGGAAGCTCA 686 Query 658 AGCAGTCTCTCTTTTCCACTCATCCCATCGAAGATACGCTGCTACTGTAGATA-TG-AAA 715 |||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 687 AGCAGTCTCTCTATTCCACTCATCCCATCGAAGATACGCTGCTACTGTCGATCCTGTAAA 746 Query 716 -A--ACGGAA--A--TTGTTTATTGTCGTTTTTAGGCTCTGTGTGTGTGCCACTACCACC 768 | | ||| | || ||||| |||||||| || ||||||||||||||| | || || Sbjct 747 TATTAAAGAAGGAAGTTCTTTATGGTCGTTTTGGGGTTCTGTGTGTGTGCCATTGCCTCC 806 Query 769 CATACAAATCTTAGGATCAGCTTCATTGGTGGCATTTAGGACATCAAACACGGATTCC-C 827 |||||||||| |||| |||||||||||||| || |||||||| ||||| | | | | | Sbjct 807 CATACAAATCATAGGGTCAGCTTCATTGGTTGCGTTTAGGACTTCAAATGCA-ACTACGC 865 Query 828 AAATCAAGACTTCATACTTATCCGATGAGGCAATCCAGTTACT-TCCAGATAAATGTTAT 886 ||||||||||||| |||||||| |||||||||||||| ||| | | |||| ||||||||| Sbjct 866 AAATCAAGACTTCGTACTTATCAGATGAGGCAATCCATTTA-TATGCAGAAAAATGTTAT 924 Query 887 GACAAAGCTAACACGTACAAGCAGCATCGTTTCCCAACTGATCTTCTTGGCTTGAAGATT 946 | |||||| ||||||||| ||||||||| ||||||| ||||||||||||||| ||||| Sbjct 925 TATAAAGCTCACACGTACAGGCAGCATCGGTTCCCAAATGATCTTCTTGGCTTAAAGATC 984 Query 947 AACAAGTTAGAAAAAGTTCTGAGCTCTTTAGGGAATGGAACCCGACAAACAGTAAGCTCT 1006 ||||||| || |||||||||| |||||||||||||||||| ||||||||||| || ||| Sbjct 985 CACAAGTTGGAGAAAGTTCTGAACTCTTTAGGGAATGGAACACGACAAACAGTGAGTTCT 1044 Query 1007 GTAACAGCAAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1066 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 GTAACAGCTAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1104 Query 1067 ATTGGGAAGAACGAGAGTGTGTTAAGTAAAAGAGTAG-AGTGGAGAACAAAACCGAAGAT 1125 ||||||||||| ||||||||| ||||||||| ||||| | |||||||||||||||||||| Sbjct 1105 ATTGGGAAGAATGAGAGTGTGATAAGTAAAAAAGTAGCA-TGGAGAACAAAACCGAAGAT 1163 Query 1126 CGAACGGGTTTGGTTTGAAGTAACAGCGAAAATTGAAGGAGATAAGTTAAAAGCAGTGGG 1185 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| | Sbjct 1164 CGAACGGGTTTGGTTTGAAGTAACGGCGAAAATCGAAGGAGATAAGTTGAAAGCAGTGAG 1223 Query 1186 GATGAGAAAAGTAGTGCCTTTCATAGAAGTGGATACAGAAGCATGGAGCAGTTTAATGTC 1245 | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1224 GCTGAGAAAAGTAGTGCCTTTCATTGAAGTGGATACAGAAGCATGGAGCAGTTTGATGTC 1283 Query 1246 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1343 Query 1306 TGTCAAATGGTAGGCGCAACACTTTTGTAAGTAACTTTGTCTAA-AGAATGGCAGGAACC 1364 |||||||||||||||||||||||||| || || | ||| | || ||||| |||| Sbjct 1344 TGTCAAATGGTAGGCGCAACACTTTTATACGTTTGATAATCTTCCATAA-GGCAGAAACC 1402 Query 1365 ACAATGTAATGATGGATTGTATTTACTTGCGCTTGTATGTATGTATGTATATACTTCTGG 1424 ||| ||||| ||||||||||||||||| || | | ||||||||||||||||||||||| Sbjct 1403 ACAGTGTAACGATGGATTGTATTTACT--CG-TCCT-TGTATGTATGTATATACTTCTGG 1458 Query 1425 TTCTATAAAGGATTATTTATCACGAAAATTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1484 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1459 TTCTGTAAAGGATTATTTATCACGAAAACTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73192394610 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5