BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473932
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1182 0.0
> AT1G47970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to
40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276;
Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses
- 1519; Other Eukaryotes - 26044 (source: NCBI BLink). | chr1:17687269-17688816
FORWARD LENGTH=924
Length=924
Score = 1182 bits (640), Expect = 0.0
Identities = 762/815 (93%), Gaps = 32/815 (4%)
Strand=Plus/Plus
Query 1 CTCTAAAAATTCTCCAGGAAAATCGAAAAC-TTTCTCGGGAAAATCTTT--AC-----AC 52
|||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 1 CTCTAAAAATTCTCCAGGAAAATCGAAAACTTTTCTCGGGAAAATCTTTAAACTTTTTGC 60
Query 53 TTTT---------ATGACTGGCG-T--TGATGATGATGATAAGAACTTCAAAGAAGAACC 100
|||| |||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCGAAGAAACATGACTGGTGTTAATGATGATGATGATAAGAACTTCAAAGAAGAACC 120
Query 101 TGAGATTCAAGTTCTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 160
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGATTCAAGTTTTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 180
Query 161 AGAAGTTAGCGACGaagatgatgatgatggaagtgaaggagatgatgatgatgatgagg- 219
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAAGTTAGCGACGAAGACGATGATGATGGAAGTGAAGGAGATGATGATGATGATGAGGA 240
Query 220 ag--gaagaagaagacgatgatgatgatgatgTTCAGGTTTTGCAGTCTTTAGGTGGTCC 277
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAAGAAGAAGATGACGATGACGATGATGATGTTCAGGTTTTGCAGTCTTTAGGTGGTCC 300
Query 278 TCCTGTACAATCAGCGgaagatgaagatgaagaaggtgatgaagatggaaacggtgatga 337
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TCCTGTACAATCAGCGGAAGATGAAGATGAAGAAGGTGATGAAGATGGGAACGGTGATGA 360
Query 338 cgatgatgatgatggagatgatgatgatgacgacgatgatgatgatgatgaagatgctga 397
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 361 CGATGATGATGATGGAGATGATGATGATGACGACGATGATGATGAGGATGAGGATGTTGA 420
Query 398 agatgaGGGGGATCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAGGATGA 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 AGATGAGGGGGATCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAAGATGA 480
Query 458 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATTGATGAAGG 517
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 481 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATAGACGAAGG 540
Query 518 AGAAGACGATGAGAACGATAACTCGGGTGGTGCTGGGAAATCAGAGGCTCCACCGAAGCG 577
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 541 AGAAGACGATGAGAATGATAACTCGGGTGGTGCTGGGAAGTCAGAGGCTCCGCCGAAGAG 600
Query 578 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 660
Query 638 AAAGAGGTAGTTTTCGGATCTGACAACAACACAATGAGACCAGAGAGCTTTT-ATGtttt 696
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 AAAGAGGTAGTTTTTGGATCTGACAACAACACAATGAGACCAGAGAGCTTTTTATGTTTT 720
Query 697 ttt----AAAAA---TTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTCATGTAAGT 749
||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TTTTTCTAAAAAAAATTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTTATGTAAGT 780
Query 750 TTATTATGCAGCAAC-AAGTAGTAGTTTTAAGTTT 783
|||||||| |||||| |||||||||||||||||||
Sbjct 781 TTATTATGGAGCAACTAAGTAGTAGTTTTAAGTTT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5