BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473970
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48350.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 1002 0.0
> AT1G48350.1 | Symbols: | Ribosomal L18p/L5e family protein |
chr1:17867204-17868342 FORWARD LENGTH=705
Length=705
Score = 1002 bits (542), Expect = 0.0
Identities = 625/665 (94%), Gaps = 6/665 (1%)
Strand=Plus/Plus
Query 25 GAGCGAGAGCGAGAGAGTGAGATAAAATGACGAGCGTGAGTGGGTGTGGTTCGGTGAGTC 84
|||| |||| ||| |||| ||| | ||||||||||||||||||||||||||| |||||||
Sbjct 40 GAGCCAGAGAGAGTGAGTAAGAGAGAATGACGAGCGTGAGTGGGTGTGGTTCAGTGAGTC 99
Query 85 TGATAACTAACCGCAGTACGTTCCTGGGAAGCGGACTTCAACACCGTGCCGTTTTCCTGA 144
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 100 TGATAACTAACCGCAGTGCGTTCTTGGGAAACGGACTTCAACACCGTGCCGTTTTCCTTA 159
Query 145 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTTGAAGCCAAAACCAAAA 204
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 160 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTCGAAGCCAAAACCAAAA 219
Query 205 CCAGCAGCGAAGACAGAATCGCCCGCCATTCTCGTATCCGTAAGAAGGTTAATGGTACGA 264
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 220 CCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGTATCCGTAAGAAGGTTAATGGTACAA 279
Query 265 CAGAGAGGCCAAGGCTCTGTGTTTTCCGTTCAAACAAGCATCTTTATGTTCAAGTGATTG 324
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 280 CGGAGAGGCCAAGGCTATGTGTTTTCCGATCAAACAAGCATCTTTATGTTCAAGTGATTG 339
Query 325 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCTATCTCTGAAG 384
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 340 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCAATCTCTGAAG 399
Query 385 AGTTTGACTACACCTCTGGACCAACCATTGAGGTAGCAAAGAAAGTTGGGGAAGTGATAG 444
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 400 AGTTCGACTACACCTCTGGACCAACCATTGAGGTAGCGAAGAAAGTTGGGGAAGTGATAG 459
Query 445 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 519
Query 505 ACCATGGACGTATTGAGGCTCTCGCTGCTGCAGCACGTGAACACGGTCTTCAGTTCTAAC 564
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 520 ACCATGGACGTATTGAGGCTCTTGCTGCTGCAGCACGTGAACACGGTCTTCAGTTTTAAC 579
Query 565 CGTCGTTTACTTTCCTTCTTCCTTTATGAGGAACAGC--T-TATGAATGTAGAGAACCCA 621
|||||||| |||||||| || |||| || ||||||| | |||||||||||||||||||
Sbjct 580 CGTCGTTTTCTTTCCTTGTTTCTTTCCGATGAACAGCAGTGTATGAATGTAGAGAACCCA 639
Query 622 TTTTCCCCTATTGAAATGTTGAAATTTTTCTAAAATT-TTGATATAAGCCTAAACCAAGG 680
|||||||| ||||||||||||| ||||||||| || | || || | |||||||||||||
Sbjct 640 TTTTCCCCAATTGAAATGTTGAGATTTTTCTATAACTATTC-TACA-GCCTAAACCAAGG 697
Query 681 CCCTG 685
|||||
Sbjct 698 CCCTG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5