BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474017 Length=1994 Score E Sequences producing significant alignments: (Bits) Value AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3... 3199 0.0 > AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 domain of STAM 1 | chr1:18043672-18047659 REVERSE LENGTH=2009 Length=2009 Score = 3199 bits (1732), Expect = 0.0 Identities = 1915/2002 (96%), Gaps = 17/2002 (1%) Strand=Plus/Plus Query 1 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTCATCGCCAATCGC 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTTATCGCCAATCGC 67 Query 61 CATTA--ATCGCGGTGCCTCTTCTCTCCTCTCGCCGACTCTTTGGACCGGAGGTTTCCTC 118 ||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||||| Sbjct 68 CATTATTATCGCGGTGCCTCTTCTCACCCCTCGCCGTCTCTTTGAACCGGAGGTTTCCTC 127 Query 119 CACCCTGTGACAATTCCGTCATCGATTGACCTCGAGCTCCGAGATCTGATCTTCAATTTG 178 |||||| ||| |||||| |||||||||||||| |||| ||||||||| | ||||||||| Sbjct 128 CACCCTTTGAAAATTCCATCATCGATTGACCTATAGCTACGAGATCTGCTTTTCAATTTG 187 Query 179 ATGCTCTTCCATTAG-TCGGAAAGTTGCTTTTGATTTCTCTTGTCGAAGCAACTATGGGG 237 ||||||||||||||| | | |||||||||||||| || | | ||||||||||||| Sbjct 188 ATGCTCTTCCATTAGTTAGAAAAGTTGCTTTTGA----TC--G--G-AGCAACTATGGGG 238 Query 238 TCGTCTTCTGAGATCATCGATATCGCAACTAGTGCTCGGAGAATTGGCGTAGATAATCGT 297 ||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 239 TCGTCTTTTGAGACCATCGATATCGCTACCAGTGCTCGGAGAATTGGCGTAGATAATCGT 298 Query 298 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 358 Query 358 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGTTTTTCAAGCTTGGCT 417 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 359 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGGTTTTCAAGCTTGGCT 418 Query 418 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAACAAAGAGTAT 477 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 419 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAATAAAGAGTAT 478 Query 478 TTGAGAATGAGACTATTGGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 537 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTGAGAATGAGACTACTAGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 538 Query 538 CAAAGGATTGATGAACTGTATCCCAAGCTCAAGCCTCGATATAATGTACAAGCTCATCCA 597 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 539 CAAAGGATTGATGAACTGTATCCCAAGCTCAAACCTCGATATAACGTTCAAGCTCATCCA 598 Query 598 TCAAATGGTTCCCTAGGCTGGTCTTCGGCCGTGAAACCATCATTAAATAGCTATGATCAT 657 ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 599 GCAAATGGTTCCCTAGGCTGGTCTTCTGCCGTGAAACCGTCATTTAATAGCTATGATCAT 658 Query 658 GCAAAGGTAAGAAATCCTCCTGGACATAATTTTGGCTACATGGGTTCCAGGGGTCAGCAA 717 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 659 GCAAAGGTAAGAAATCCTCCTGGACATAATTCTGGCTACATGGGTTCCAGGGGTCAGCAA 718 Query 718 TTTTTGAATGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 777 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTTTTGAACGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 778 Query 778 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 838 Query 838 CAGCCTCCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 897 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CAGCCACCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 898 Query 898 GTAATCCCAAGCTTCCAACAATTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 957 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 899 GTAATCCCAAGCTTCCAACAACTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 958 Query 958 GATGAACCTGAAAGGCCAATTGTGGAACCAAGTGTTGCATCTAGTGAAAATATCCAGAAA 1017 ||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 959 GATGAACCTGAAAAGCCAATTGTGGAACCCAGTGTTGCATCTAATGAAAAAATCCAGAAA 1018 Query 1018 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTACTGAT 1077 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1019 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTAATGAG 1078 Query 1078 AATAATCTCATTAGGCAACCTTCACCACCTCCGGTGCTAGCAGAAGTTCAAGACTTGGTT 1137 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1079 AACAATCTCATTAGGCAACCTTCACCACCTCCAGTGCTAGCAGAAGTTCAAGACTTGGTT 1138 Query 1138 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATCATAGAAAACTCTCTGCCAGAT 1197 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1139 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATGATAGAAAACTCTCTGCCGGAT 1198 Query 1198 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCAACAACAATGATGGATACC 1257 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1199 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCGACTTCAATGATGGATACC 1258 Query 1258 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATACTTGCT 1317 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1259 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATTCTTGCC 1318 Query 1318 GGCTCACTGAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1377 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 GGTTCACTAAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1378 Query 1378 ACATCTGACTCGTGTCAGGCCACAAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1437 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1379 ACATCTGACTCGTGTCAGGCCACGAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1438 Query 1438 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1498 Query 1498 ATTGATGTTCACACGCACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCGATCGTT 1557 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1499 ATTGATGTTCACACACACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCAATCGTT 1558 Query 1558 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTCCGGCTGACGACGCCGGGAGGA 1617 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1559 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTTCGGCTGACGACGCCGGGAGGA 1618 Query 1618 ATGACGGTGATAAGGAATTGTGACCAGCGTGGGTTTCATGCGCACAGTTCGCCGGCGGAC 1677 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 1619 ATGACGGTGATAAGGAATTGTGACCGGCGTGGGTTTCATGCGCACAGTTCACCGGAGGAC 1678 Query 1678 GGAGGACCAATTTACAATACGTGTAAGGAAGTTTACATGAACCCTAATCTCAAGTTTGAT 1737 ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1679 GGAGGGCCAATTTACAATACCTGTAAGGAAGTTTACATGAACCCAAATCTCAAGTTTGAT 1738 Query 1738 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAGAGTGAAACTATGTTCTCAAGGCC 1797 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1739 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAAAGTGAAACTATGTTCTCAAGGCC 1798 Query 1798 AT-TTT-CTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATT 1855 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 ATCTTTTCTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATC 1858 Query 1856 TATGTAAGTTTTCATGTACAAT--T-ATATGTTTACAAGTCTTACATGTAAAACTGAACT 1912 || |||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| Sbjct 1859 TACGTAAGTTTTCGTGTACAATAATTATATGTTTACAAGGCTTACATGTAAAACTGAACA 1918 Query 1913 AAAATCAAGATACAAGAGCAAGTGATTTGTGATAAAGTTATCGTTGTGTCACCATCTATT 1972 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1919 AAAATCAAGATACAAGAGCAAGTGATTTGTGCTAAAGTTATCGTTGTGTCACCATCTATT 1978 Query 1973 CAAACCTACATAATATTATTAC 1994 ||||||||| ||||||| |||| Sbjct 1979 CAAACCTACGTAATATTTTTAC 2000 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98794672560 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5