BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474072 Length=1071 Score E Sequences producing significant alignments: (Bits) Value AT1G49320.1 | Symbols: ATUSPL1, USPL1 | unknown seed protein li... 1539 0.0 > AT1G49320.1 | Symbols: ATUSPL1, USPL1 | unknown seed protein like 1 | chr1:18246305-18247992 FORWARD LENGTH=1154 Length=1154 Score = 1539 bits (833), Expect = 0.0 Identities = 1021/1104 (92%), Gaps = 43/1104 (4%) Strand=Plus/Plus Query 1 ATTGAGATCTAAGATCACTT------TTa-aaaaaaTATTCTGCTCTCCttt-t-t-t-t 49 |||||||||||||||||||| ||| |||||||||| |||||| |||| | | | | Sbjct 1 ATTGAGATCTAAGATCACTTGAACACTTATAAAAAATATTTTGCTCTTCTTTCTATATAT 60 Query 50 ATAAACAAAAAGTCAAAATATCaagaagaggaagaagaagaagaaACTCA--TT-T---- 102 || | |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 61 TTATATAAAAAGTCAAAATATCAAGAAGAGGAAGAAGAAGAAGAAACTCATTTTCTCCGC 120 Query 103 --------T-C--T--ATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCCT 149 | | | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 AGAGAAAATACAATCCATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCAT 180 Query 150 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCAAGAAAGCTGATATCAATCAAGGA 209 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 181 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCTAGAAAGTTGATATCAATCAAGGA 240 Query 210 AAACGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTCGATGATCCTTCATT 269 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 241 AAAAGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTTGATGACCCTTCGTT 300 Query 270 GTACATGTATTTCACACCCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 329 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTACATGTATTTCACACTCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 360 Query 330 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCTGATCTCATTCC 389 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 361 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCCGATCTCATTCC 420 Query 390 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCGATCACCAAAGACTCTCC 449 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCTATCACCAAAGACTCTCC 480 Query 450 TCAAGGGAAAGCCATAAAGGAGACTCTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 509 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 TCAAGGGAAAGCCATAAAGGAGACTTTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 540 Query 510 GCATAAGTTTTGCGGGACTTCTTTGGAGTCTTTGATCGATCTCGTGAAGAAAACAATGGG 569 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 541 GCATAAGTTTTGTGGAACTTCTTTGGAGTCATTGATCGATCTTGTGAAGAAAACAATGGG 600 Query 570 GTATAATGTTGACCTCAAGGTCATGACAACTAGAGTAATGGCACCGGCCCAAAATTCTAT 629 ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || Sbjct 601 GTATAATGTTGACCTCAAGGTCATGACGACTAAAGTAATGGTACCGGCCCAAAATTCGAT 660 Query 630 AAGCTACGCTTTGCATAACTATACATTCGTCGAGGCTCCTAAGGAACTTGTCGGTATTAA 689 ||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| Sbjct 661 AAGCTACGCTTTGCATAACTACACATTCGTCGAGGCTCCAAAGGAACTTGTTGGGATTAA 720 Query 690 GATGTTGGGATGCCATAGAATG-CTATACCCTTATGCTGTTTACTATTGCCACGGACATA 748 |||||||||||| || |||||| || |||||||||||||||||||||||||| ||||||| Sbjct 721 GATGTTGGGATGTCACAGAATGCCT-TACCCTTATGCTGTTTACTATTGCCATGGACATA 779 Query 749 AAGGTGGAAGCAGAGTCTTTGAAGTTAATCTGGTGACGGATGATGGGAGACAACGGGTTG 808 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 780 AAGGTGGAAGTAGAGTCTTTGAAGTTAATTTGGTGACGGATGATGGGAGACAACGGGTAG 839 Query 809 TAGGACCCGCTGTCTGCCACATGGACACGTCCACGTGGGATGCGGATCATGTAGCTTTTA 868 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 840 TAGGACCCGCTGTCTGCCACATGGACACATCCACGTGGGACGCGGATCATGTAGCTTTTA 899 Query 869 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 928 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 959 Query 929 TTGTGTGGGTAACAAAGTAAGAAAATAGACTTAGCTCTATATAATGTGAGTATGTGTT-G 987 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 960 TTGTGTGGGTAACAAAGTAAGAAAATAGACGTAGCTCTATATAATGTGAGTATGTGTTTG 1019 Query 988 TAATAACTATGGTTTGAAAGATaaaaaaaaaggaaaaaaaaaaaaaaGAAAGACAGCCTT 1047 |||||||||||||||||||| ||||| | |||| |||| |||| | ||||||||| Sbjct 1020 TAATAACTATGGTTTGAAAGG-AAAAA----G-AAAAGAAAAGAAAA-A--GACAGCCTT 1070 Query 1048 AATGTTGGCTTTGGTATTGCCTCT 1071 |||||||||||||||||||||||| Sbjct 1071 AATGTTGGCTTTGGTATTGCCTCT 1094 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52459569525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5