BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474085
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49470.1 | Symbols: | Family of unknown function (DUF716) ... 1550 0.0
> AT1G49470.1 | Symbols: | Family of unknown function (DUF716)
| chr1:18310494-18311634 FORWARD LENGTH=1141
Length=1141
Score = 1550 bits (839), Expect = 0.0
Identities = 939/987 (95%), Gaps = 8/987 (1%)
Strand=Plus/Plus
Query 1 CCACAATTAACAGAtttttttttttttttGGAAACCATCAAAACTTaaaaaaaC-ATTAG 59
|||||||||||||| ||| || |||||||||| |||||||||| |||||| || ||
Sbjct 5 CCACAATTAACAGA---TTTATTGTTTTTGGAAATAATCAAAACTT--AAAAACTATCAG 59
Query 60 AATGGGAACGTTCCTAGGACATTTTGTGCCCGGTCTCTCACTTGCTCTTCTTGGTCTTTG 119
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 60 AATGGGAACGTTCTTAGGACACTTTGTGCCTGGTCTCTCACTTGCTCTTCTTGGTCTTTG 119
Query 120 GCATCTCTTCAACACCATAAGATCTTACTGTCTTCAAGGCCCTCAAACTTTCTCTGCACA 179
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 120 GCATCTCTTCAACACCATAAGATCTTACTGTCTTAAAGGCCCTGAAGCTTTCTCTGCAAA 179
Query 180 ATTCTGGTTCCCTTTCCCTAAACTCAAACATCTCGAGCTTATCTTGATTCTCTTCTTCTC 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ATTCTGGTTCCCTTTCCCTAAACTCAAACATCTTGAGCTTATCTTGATTCTCTTCTTCTC 239
Query 240 CTTCCTCTCCATCACTCTCCTAACCCTAGATTTCCCTAATTTCAACTTCTCCTCTTTCAA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 240 CTTCCTCTCCATCACTCTCCTCACCCTAGATTTCCCTAATTTCAACTTCTCCTCTCTCAA 299
Query 300 ACCAGACAACCTAGAACATGCTTCCATGTTCCTCCACCTCATTATCTTTTCGTGTTTCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 ACCAGACAACCTAGAACATGCTTCCATGTTCCTCCACCTCATTATCTTTGCGTGTTTCGC 359
Query 360 TCTCTTCTGCGAGCTAACCCTGTGCTCAGATCTCTTCTCCGGTCTAATCGGAGTCCTCTC 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 360 TCTCTTCTGCGAGCTAACCCTTTGCTCAGATCTCTTCTCCGGTCTAATCGGAGTTCTTTC 419
Query 420 TGCCTCTGTCTTCGCTCAAGAACTCTTCCTTCTTCATTTTCACTCCACTGATCATTCAGG 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TGCCTCTGTCTTCGCTCAAGAACTCTTCCTTCTTCATTTTCATTCCACTGATCATTCAGG 479
Query 480 TCTTGAAGGTCACTACCACTTCCTTCTCCAACTCATTGCTTTCGTCTCCTTCTCCTCGGC 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTGAAGGTCACTACCATTTCCTTCTCCAACTCATTGCTTTCGTCTCCTTCTCCTCGGC 539
Query 540 TCTAGCTTCTGCTTCTTTCCCTAAATCCTTCTCTGCGGCTATAGTCCTCCCGATCTCGGT 599
|||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||
Sbjct 540 GCTAGCTTCTGCTTCGTTCCCTAAATCCTTCTCTGCGGCTCTATTCCTCCCGATATCGGT 599
Query 600 TATGTTTCAAGGATGCTGGTTCTTAAACATGGGCTTCATGCTTTGGGTCCCAGAGTATGT 659
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 600 TATGTTTCAAGGATGCTGGTTCTTGAACATGGGGTTCATGCTTTGGATCCCAGAGTATGT 659
Query 660 TCCAAGAGGTTGCGTGAGTAACATGTCAACATCTACAGACAATAACAGAAGAAGTGTTGT 719
||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 660 TCCTAGAGGTTGCGTGAGTAACATGTCAACATCTACAGACAATAATAGAAGGAGTGTT-T 718
Query 720 -TCATAGTGGTGCGGTGGCTTGTGATTCCGCTGGTGCTGAGGTTAGGGCAAAAGCATTGG 778
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 719 ATCATAGTGGTGCGGTGGCTTGTGAGTCCCCTGGTGCTGAGATTAGGGCAAAAGCATTGG 778
Query 779 CGAATCTGCAGTTTAGTTGGATGTTGTCTGCTATACTGATAATTACATGTGCCTTGTGCC 838
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 779 CGAATCTGCAGTTTAGTTGGATGTTGTCTGCTATACTTATCATTACATGTGCCTTGTGCC 838
Query 839 TCAAGTTTTCCGGTAAAGTTGTGTTGCCTAAGATTAGGTCGTCGTTGGAGTACGAGCGAC 898
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 839 TCAAGTATTCCGGTAAAGTTGTGTTGCCTAAGATTAGGTCATCGTTGGAGTACGAGCGTC 898
Query 899 TTTGCCGGCAAGGAAGTGATCGTTCTGCAACCGTAACGGTGGAAGCACCGGCCAGTTCCG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGCCGGCAAGGAAGTGATCGTTCTGCAACCGTAACGGTGGAAGCACCGGCCAGTTCCG 958
Query 959 ATCAACAATAGATTTTCCTTACTTTAA 985
|||||||||||||||||||||||||||
Sbjct 959 ATCAACAATAGATTTTCCTTACTTTAA 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5