BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474101
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49720.2 | Symbols: ABF1 | abscisic acid responsive element-... 1701 0.0
AT1G49730.1 | Symbols: | Protein kinase superfamily protein | ... 71.3 3e-11
> AT1G49720.2 | Symbols: ABF1 | abscisic acid responsive element-binding
factor 1 | chr1:18400092-18402628 FORWARD LENGTH=1589
Length=1589
Score = 1701 bits (921), Expect = 0.0
Identities = 1088/1165 (93%), Gaps = 25/1165 (2%)
Strand=Plus/Plus
Query 90 AGAA-TTGGAAGGAAGTGATTTC-TTGTGAAACAGAGAAGAAGTATGGGTACTCACATCG 147
|||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
Sbjct 68 AGAATTTGGAAGGAAGTGATTCCGTTGTGAAACAGAAAAGAAGTATGGGTACTCACATTG 127
Query 148 ATTTCAACAACTTAGGCGGCGAT-TTGTCTGGAGGGAATGAGTGTAATGCTAACCAGTCA 206
|| |||||||||||||||||||| | ||| | | | | | | |||| |||||
Sbjct 128 ATATCAACAACTTAGGCGGCGATACT-TCT--A--G-A-G-G-G-AATG------AGTCA 171
Query 207 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGTACA 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 172 AAGCCATTGGCGAGGCAGTCTTCGTTATATTCCTTAACGTTTGATGAGCTTCAGAGCACA 231
Query 267 TTAGGTGAGCCAGGGAAAGATTTTGGGTCAATGAATATGGATGAGCTACTCAAGAACATA 326
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 232 TTAGGTGAGCCGGGGAAAGATTTTGGGTCTATGAATATGGATGAGTTACTCAAGAACATA 291
Query 327 TGGACTACTGAGGATACTCAAGCCTTTATGACTGCTACATCTTCGGTTGCAGCAGCGAGA 386
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 292 TGGACTGCTGAGGATACTCAAGCCTTTATGACTACTACATCTTCGGTTGCAGCCCCGGGA 351
Query 387 CCTAGTGGTTGTGTTCCGGGAGGGAATGCTTTACAGAGGCAAGGCTCCTTGACTTTGCCT 446
|||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||
Sbjct 352 CCTAGTGGTTTTGTTCCGGGAGGAAATGGTTTACAGAGGCAAGGCTCCTTGACCTTGCCT 411
Query 447 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGCAATACTTGAATTCGAAAGAAGGT 506
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 412 AGAACGCTTAGTCAGAAGACTGTCGATGAAGTCTGGAAATACCTGAATTCGAAAGAAGGT 471
Query 507 AGCAATGGGAATACTGGAACGGATGCGCCTGAGAGGCAACAGACTTTAGGGGAAATGACT 566
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 472 AGTAATGGGAATACTGGAACGGATGCGCTTGAGAGGCAACAGACTTTAGGGGAAATGACT 531
Query 567 CTGGAGGATTTCTTGCTCCGTGCTGGCGTTGTTAAAGAAGATAATGCTCAGCAGAACAAA 626
||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 532 CTGGAAGATTTCTTACTCCGTGCTGGCGTTGTTAAAGAAGATAATACTCAGCAGAACGAA 591
Query 627 AACAGTAGTACCGGGTTTTATGCTAACAACAGTGCTGCTGGTTTGGGGTTTGGATTTGGT 686
|||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 592 AACAGTAGTAGCGGGTTTTATGCTAACAACGGTGCTGCTGGTTTGGAGTTTGGATTTGGT 651
Query 687 CAGCCGAATCAAAACAGCATATCGTTCAACGGCAACAATAATTCTATGATCATGAATAAA 746
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 652 CAGCCGAATCAAAACAGCATATCGTTCAACGGGAACAATAGTTCTATGATCATGAATCAA 711
Query 747 GCACCTGTTTTAGGCCTCAAAGTTGGTGGAACCAT------gcagcagcagccacatcag 800
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 712 GCACCTGGTTTAGGCCTCAAAGTTGGTGGAACCATGCAGCAGCAGCAGCAGCCACATCAG 771
Query 801 cagcagttgcagcagcCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAACGAAT 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 772 CAGCAGTTGCAGCAGCCACATCAGAGACTGCCTCCAACTATCTTTCCAAAACAAGCGAAT 831
Query 861 GTAACATTTGCAGCGCCTGTGAATATGGTCAACAGGGGTTTATTTGAGACTGGCGCAGAT 920
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 832 GTAACATTTGCGGCGCCTGTAAATATGGTCAACAGGGGTTTATTTGAGACTAGCGCAGAT 891
Query 921 GGTCCAGTCAACAGTAATATGGGAGGAGCAGGGGCCACTGTTACAGCTACTTCTCCTGGG 980
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 GGTCCAGCCAACAGTAATATGGGAGGAGCAGGGGGTACTGTTACAGCTACTTCTCCTGGG 951
Query 981 ACGAGCAGTGCAGAAAACAATGCTTGGTCATCACCAGTTCCTTATGTGTTTGGTCGGGCA 1040
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
Sbjct 952 ACGAGCAGTGCAGAAAACAATACTTGGTCATCACCAGTTCCTTACGTGTTTGGTCGGGGA 1011
Query 1041 AGAAGAAGCAATACCGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1100
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGAAGAAGCAATACGGGCCTGGAGAAGGTTGTTGAGAGAAGGCAAAAGAGAATGATCAAG 1071
Query 1101 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAGCAGGCTTATACCTTGGAACTGGAA 1160
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1072 AATCGGGAATCCGCTGCTAGATCAAGGGCTCGAAAACAGGCTTATACCTTGGAACTGGAA 1131
Query 1161 GCCGAGATTGAAAGTCTCAAGCAAGTGAATCAAGATTTGCAGAAAAAACAGGCTGAAATT 1220
|| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1132 GCTGAGATTGAAAGTCTCAAGCTAGTGAATCAAGATTTGCAGAAGAAACAGGCTGAAATA 1191
Query 1221 ATGAAAACTCAGAATAGTGAGCTAA 1245
|||||||| || ||||||||| |||
Sbjct 1192 ATGAAAACCCATAATAGTGAGGTAA 1216
Score = 385 bits (208), Expect = 8e-106
Identities = 276/306 (90%), Gaps = 15/306 (5%)
Strand=Plus/Plus
Query 1242 CTAAAGGAATCGTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1301
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CTAAAGGAATTTTCGAAGCAGCCTCCATTGCTGGCCAAAAGACAATGCTTGAGAAGAACC 1297
Query 1302 CTTACCGGTCCGTGGTAAAAAGGTGAAGTCAAAGCAAGAAGAGCCTGCTAATGTAATACA 1361
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1298 CTTACCGGTCCGTGGTAAGAAGGTGAAGTCAAAGCAAGAAGAACCTGCTAATGTAATACA 1357
Query 1362 TCACCA---AAAAG-AAGACATTGGGAGACTAATATGTAATAGATGATAGTGCTACTGTA 1417
|||| ||||| |||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 1358 GGACCACTCAAAAGGAAGACACTGGGAGAGTAATATGTAATAGAAGATAGTGCTACTGTA 1417
Query 1418 CAGGAGAGATTACAGAGACTCTTACAATGTAGAAATCTTT-GAGCTGAATCTAACTAAGA 1476
||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 1418 CAGGAGAAATTACAGAGACGCTTACAATGTAGAAATCTTTTGAGCTGAATTTAACTAAGA 1477
Query 1477 GTGC--T------A-AGTATCAGAAGCTTTCAATATGAATTCATAATTTTCATATATATA 1527
|||| | | ||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct 1478 GTGCAGTCTGTGTAGAGTATGAGA-GCTTTCAATATGAATTCATAATTTTCATAAACATA 1536
Query 1528 TGTAAA 1533
||||||
Sbjct 1537 TGTAAA 1542
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCGCAGCTCTTCTCTATTTTCAGCAATCGCCAATAATATTAG 48
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 22 TCTCTCTCGCAGCTCTTCTCTATTTTCAGCAATCGCCTATAATATTAG 69
> AT1G49730.1 | Symbols: | Protein kinase superfamily protein
| chr1:18402506-18405681 REVERSE LENGTH=2237
Length=2237
Score = 71.3 bits (38), Expect = 3e-11
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 1483 AGTATCAGAAGCTTTCAATATGAATTCATAATTTTCATATATATATGTAAA 1533
||||| || |||||||||||||||||||||||||||||| | |||||||||
Sbjct 2211 AGTATGAG-AGCTTTCAATATGAATTCATAATTTTCATAAACATATGTAAA 2162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5