BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474107 Length=1659 Score E Sequences producing significant alignments: (Bits) Value AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1812 0.0 AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 688 0.0 > AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:18410929-18412801 REVERSE LENGTH=1755 Length=1755 Score = 1812 bits (981), Expect = 0.0 Identities = 1185/1281 (93%), Gaps = 24/1281 (2%) Strand=Plus/Plus Query 200 cctcctccacctcc---ccctcctccatgccctcctcctcctccatgccctcctgctcca 256 ||| |||| ||||| |||||||||| |||| ||||||||||| |||||||| ||||| Sbjct 242 CCTTCTCCCCCTCCATGCCCTCCTCCA--CCCT-CTCCTCCTCCAAGCCCTCCTCCTCCA 298 Query 257 CAGCTTCCACCGCATCCACCACCGCATCCACCACCT--A-CGCCT-AA--GAAG-C--CG 307 ||||||||| | | ||| |||| || ||| || ||| | ||||| || || | || Sbjct 299 CAGCTTCCA-C-C-TCCTCCACAGCTTCCGCCGCCTGCACCGCCTAAACCCCAGCCATCG 355 Query 308 CCGCCAACACCTGATCTACAGTTTGCGAGCTCACTAATAAAGAAAGTCTATCCAGTTCTG 367 ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| Sbjct 356 CCGCCAACACCTGATCTACCGTTTGCGAGCTCATTATTAAAGAAAGTCTATCCAGTTCTC 415 Query 368 CAAAGATTCAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGACCCGACATT 427 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 416 CAAAGATTTAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGCCCCGACATT 475 Query 428 TGCAACAAATACCTCGGACTCAAATGTGCGATTTTTCCAGGAACCACCG-ATCTCGCACT 486 |||||||||||||||||||||||||| || | |||||| | || || | |||||||||| Sbjct 476 TGCAACAAATACCTCGGACTCAAATGCGCCA-TTTTCCCGAAAACAAAGCATCTCGCACT 534 Query 487 CGGGATCGTCAAGTTTAATGGGTTAAAATTGAGAGCCAAGAGAGGCAAGAAACTCCTGTT 546 || || |||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||| Sbjct 535 CGCGAGCGTCCAGTTTAATGGGTTAAACTTGAGAGGCAAGATAGGCAAGATCCTCAAGTT 594 Query 547 AGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGATTT 606 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 595 AGATAACTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGGTTT 654 Query 607 CATAGGCTCTGTGCCTGACATCAGCAAGTTGACATACTTATTCGAGCTCGATCTAAGCAA 666 || ||||||||||||||| ||||||| |||| || ||||| |||||||||||||||||| Sbjct 655 CACAGGCTCTGTGCCTGATTTCAGCAATTTGAAATTCTTATACGAGCTCGATCTAAGCAA 714 Query 667 CAACAAACTCACCGGAGATTTCCCAACCAATGTCTTG-ATGAAAAACAATCTCACGTTTC 725 |||||||||||| |||||||||||||| | ||||||| | | ||||||||||||||||| Sbjct 715 CAACAAACTCACAGGAGATTTCCCAACTAGTGTCTTGAAAG-GAAACAATCTCACGTTTC 773 Query 726 TTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 784 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 774 TTGATCTCAGGTTCAATTC-TTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 832 Query 785 CTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCAAGCAATCTTGGA 844 || || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 833 CTCGACGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCACTCAATCTTGGA 892 Query 845 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTTCAATACCCGAG 904 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 893 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTCCAATTCCCGAA 952 Query 905 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCTTGAATAACCAGTTAACCGGA 964 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 953 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCCTGAATAACAAGTTAACCGGA 1012 Query 965 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1072 Query 1025 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1132 Query 1085 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATCGTATGCGAGATTGCTTGTCTC 1144 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1133 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATTGTATGCGAGATTGCTTGTCTC 1192 Query 1145 AAAAACGTTTCTCTCTCGTATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1204 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1193 CAAAACGTTTCTCTCTCGAATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1252 Query 1205 ATCAAGAGAAACATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1264 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 ATCAAGAGAAAAATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1312 Query 1265 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCTTAATTCCAAGTCT 1324 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1313 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCCTAATTCCAAGTCT 1372 Query 1325 TTGTTTACTGTCCCTTGTGGTAAGAATCCAAACAGGGTTAAACCGGATCAAGAACAATTG 1384 ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||| Sbjct 1373 TTGTTTACTGTCCCTTGTGATAAGAATCCAAACCGGGGTAAACCGGATCAAGAACGATTG 1432 Query 1385 GAGGACGAAAAAGCTCGAGTTTCTCATTCGGTATCTTACAACACACTTAACCCGGACCGG 1444 ||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1433 GAGGAGGAAAAAGCTCAAGTTTCTCATCCGGTAACTTACAACACACTTAACCCGGACCGG 1492 Query 1445 ATTCGGAATCTATAACCTTGG 1465 |||||||||||||||||||| Sbjct 1493 CTTCGGAATCTATAACCTTGG 1513 Score = 346 bits (187), Expect = 4e-94 Identities = 227/245 (93%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 1 ACCACAAAAtctcatcaactcaatggcttcaattctctcaattcttcttctcattctttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCACAAAATCTCATCAACTCAATGGCTTCAATTCTCTCAATTCTTCTTCTCATTCTTTC 60 Query 61 actttctaatctccacttcacttTA-CCTACCGGAAACAGCCACATTAACGACAGAAAAT 119 |||||| |||||||||||||||| | || |||||||||| |||||||||||||||||||| Sbjct 61 ACTTTCAAATCTCCACTTCACTTCAACC-ACCGGAAACAACCACATTAACGACAGAAAAT 119 Query 120 CCTTAGAAATCATTATCGGTGGTGGTGACGACGGCAATCCTCCACCGTCACC------GG 173 |||||||||||||||||||||||||| ||||| |||||||||||||||||| || Sbjct 120 CCTTAGAAATCATTATCGGTGGTGGTAACGACAACAATCCTCCACCGTCACCTTCACCGG 179 Query 174 AACCGGAACCAGAACCTGCAGATTGccctcctccacctccccctcctccatgccctcctc 233 |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 180 AACCAGAACCAGAACCTGCAGATTGCCCTCCTCCCCCTCCTCCTCCTCCATGCCCTCCTC 239 Query 234 ctcct 238 | ||| Sbjct 240 CACCT 244 Score = 239 bits (129), Expect = 7e-62 Identities = 170/189 (90%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 1475 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAAAGAATAAATGTATTTGTA 1534 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1565 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAGTGAATAAATGTATT-GTA 1623 Query 1535 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGTTGTTTAATCCATCCTT-T- 1592 |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | Sbjct 1624 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGATGTATAATCCATCCTTCTG 1683 Query 1593 TCTTAA-TAAA-ACATCTTGTTTTGTATGAATCACTGCAAACTTGTTCATCCAATGGTGG 1650 | || | |||||||| ||||| |||||||||| ||| |||||||||||||||||| Sbjct 1684 TTTTTTCTTTGTACATCTTGCTTTGTGTGAATCACTGTAAAATTGTTCATCCAATGGTGG 1743 Query 1651 ATATCATCG 1659 ||||||||| Sbjct 1744 ATATCATCG 1752 > AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6696395-6698073 REVERSE LENGTH=1482 Length=1482 Score = 688 bits (372), Expect = 0.0 Identities = 763/946 (81%), Gaps = 49/946 (5%) Strand=Plus/Plus Query 530 GGCAAGAAACTCCTGTTAGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCAC 589 ||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| ||| Sbjct 562 GGCAAGAAACTCCGGCTAGATAACTTCCTCAACAAGTTAGAAGAAGTCACCATCTTTCAC 621 Query 590 GCAAACTCCAACGATTTCATAGGCTCTGTGCCTGACATCAGCAAGTTGACA-TA-CTTAT 647 |||||| ||| |||| | |||||||| || || ||||||| |||| | || ||| | Sbjct 622 GCAAACAGTAACAATTTTGTGGGCTCTGTTCCAAACTTCAGCAAATTGA-AGTACCTT-T 679 Query 648 TCGAGCTCGATCTAAGCAACAACAAACTCACCGGAGATTTCCCAACCAATGTCTTGATGA 707 ||||||| ||||| |||||||| || ||| | ||||| ||||||| | ||| || | | Sbjct 680 TCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTCTGTGTT-A--A 736 Query 708 AA--AAC-AATCTCACGTTTCTTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCT 763 || ||| || ||||||||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct 737 AAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAATTC-TTTCTCCGGTTCTGTCCCT 795 Query 764 CCTCAGGTCTTT-AATCTCGACCTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCA 822 |||||||| ||| ||||| ||||| || || ||||||||||||||||||||||||||||| Sbjct 796 CCTCAGGT-TTTCAATCTAGACCTCGACGTATTGTTCATCAACAACAACAATCTTGTTCA 854 Query 823 GA-AGCTTCCAAGCAA-TCTTGGATCCATCACTGCTCTTTACCTCACCTTCGCCAACAAC 880 || | || || | || ||||||||| ||||| |||||||||||||| ||||| || ||| Sbjct 855 GAGA-CTCCCT-GAAAATCTTGGATCGATCACCGCTCTTTACCTCACATTCGCTAATAAC 912 Query 881 AGGTTCACGGGTTCAATACCCGAGA-GCATAGGCAACATCAAGTACCTACAAGAAGTCCT 939 || ||||| ||| | || || | || |||| || ||||||||| ||||||||||||||| Sbjct 913 AGATTCACAGGTCCTATTCCGG-GAAGCATTGGTGACATCAAGTCCCTACAAGAAGTCCT 971 Query 940 TTTCTTGAATAACCAGTTAACCGGATGCTTACCGTACCAAATCGGAAACCT-AACCCGAG 998 ||||||||||||| ||||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct 972 TTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATTGGGAACCTTAACC-GAG 1030 Query 999 CCACTGTTTTCGATGTTGGGTTCAACCAATTAACCGGTCCAATACCGTACTCTTTCGGTT 1058 | || ||||||||||||| ||| ||||| ||||||||||| || |||||||||||||| | Sbjct 1031 CTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATTCCGTACTCTTTCGGAT 1090 Query 1059 GCTTAGA-AACGATGGAACAACTCAATTTAGCCGGAAACAAGTTCTATGGAACCATACCG 1117 || || | || |||||| || || ||||| || ||||||| ||||| || || |||||| Sbjct 1091 GCCTAAAGAA-GATGGAGCAGCTGAATTTGGCTAGAAACAATTTCTACGGTACTATACCG 1149 Query 1118 GAGATCGTATGCGAGAT-TGCTTGTC-TCAAAAACGTTTCTCTCTCGTATAATTACTTCA 1175 ||||| || |||||| | | | | | |||| ||| ||||||||||||| |||||||||| Sbjct 1150 GAGATTGTCTGCGAGCTCT-CA-GCCCTCAAGAACCTTTCTCTCTCGTACAATTACTTCA 1207 Query 1176 CTCAGGTTGGTCCGAAATGTAGAAAACTCATCAAGAGAAACATTATGGACGTTAGTATGA 1235 | ||||| ||||| |||||| ||| |||||||||||| || ||| | || || |||||| Sbjct 1208 CACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTTGATGTGGGTATGA 1267 Query 1236 ATTGTATACTTGATCTTCCAAACCAGAA-AACGCCATCGGAGTGTGCTAAGTTCTTCATG 1294 ||||||| || |||||| | || || || ||| |||| ||| || || ||||| ||| || Sbjct 1268 ATTGTATTCTAGATCTTACGAATCA-AAGAACACCATGGGAATGCGCCAAGTTTTTCTTG 1326 Query 1295 CGGAAACAGACTTGTCTTAA-TTCCAAGTCTTTGTTT-ACTGTCCCTTGTGGTAA-GAAT 1351 |||||||||| ||||| ||| || |||||||| ||| | | |||||||||| || || | Sbjct 1327 CGGAAACAGAGTTGTCCTAACTTT-AAGTCTTTCTTTTA-TCTCCCTTGTGGCAAAGA-T 1383 Query 1352 CCAAACAGGGTTAAACCGGATCAAGAACAATTGGAGGACGAAAAAGCTCGAGT-TTCTC- 1409 || || || ||||||||||||||||| || || ||| | || || ||| | Sbjct 1384 CCCCACCGGATTAAACCGGATCAAGAAGGATC--AG-ACG-----G-TC-AGGCTTCGCC 1433 Query 1410 ATTCGGTATCTTACAACACACTTAACCCGGACCGGATTCGGAATCT 1455 | ||||||||||||| | |||||||| ||||||||||||||||| Sbjct 1434 AC-CGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCT 1478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81977489985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5