BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474138 Length=871 Score E Sequences producing significant alignments: (Bits) Value AT1G50020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1240 0.0 > AT1G50020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18519946-18521695 REVERSE LENGTH=923 Length=923 Score = 1240 bits (671), Expect = 0.0 Identities = 813/876 (93%), Gaps = 31/876 (4%) Strand=Plus/Plus Query 1 TATAAAACACAGCTTCCTTCCTTCCTCCTATATATTCAGCGGCGACGCCTGGATCATGAT 60 ||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||| Sbjct 8 TATAAAACACAGCTTCCTT-CTT-CTCCTATATATTCATCGGCGACGCCTTGATCATGAT 65 Query 61 TCTTTCCGGCATCTGA-AAGAGAAACAAAAATGGCTTCTTCTTCTCTCGAGATTGTTAAA 119 ||||||||| | |||| ||||| |||||||||||||||||||||||| |||||||||||| Sbjct 66 TCTTTCCGGAAACTGATAAGAGGAACAAAAATGGCTTCTTCTTCTCTGGAGATTGTTAAA 125 Query 120 TTGTGTGGCTCTCCTGTTTC-TATTCCCCGCCATAAATCTCCCATTAAATTGGAATGTAG 178 ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||| Sbjct 126 TTGTGTGGCTCTCCTGTATCGT-TTCCCCGCCATAAATCTCCCATAAAATTGGAATGTAG 184 Query 179 AAAAAGGGTTCTAAGATTATCCGATTCTAGGACTTGGCATCGTCTTGGTACATGTGTTAG 238 |||||||||| | |||||| || ||||||||| |||||| || || | |||| Sbjct 185 AAAAAGGGTTTTCAGATTACCCAATTCTAGGAGTTGGCA---TC---GT-C-----TTAG 232 Query 239 GGTTTATTCTTCTGCTCTCAA---CGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 295 ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 233 GGTTTCTTCATCTGCTCTCAATGGTGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 292 Query 296 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCGTTGCTTCAAGA 355 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 293 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCCTTGCTTCAAGA 352 Query 356 CTATGAAGTGGATCAGGATGAGATCAAAACCGATAAAGAAACCGGAAACAGTTCTAAAAC 415 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 353 CTATGAAGTGGATCAGGATGAGATCAAAACCGGTAAAGAAACCGGAAACAGCTCTAAAAC 412 Query 416 GACTGCAACTTCTCCGGCGTTTGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 475 |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 413 GACTGCAACTACTCCGGCCTTCGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 472 Query 476 TTTAAACAGTGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 535 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TTTAAACAGCGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 532 Query 536 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCCTAACTCTCGGCGCCTTCTCTGC 595 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 533 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCTTAACTCTCGGCGCCTTCTCTGC 592 Query 596 TCTTTACCTTTACTTTGGAGCAGATTTCGTTCATGATGGAAGTAGAACTCCCGTTTCACC 655 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 593 TCTTTACCTTTACTTTGGAGCAGATTTCATTCATGATGGAAGTAGAACTCCGGTTTCACC 652 Query 656 ACCACCGTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 715 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 ACCACCTTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 712 Query 716 TCGTGTAAATTAGCAGGCAACAAGTTGTTCTCTATACTCTACATAACTACTAGTATAGAG 775 |||| |||||||||||||||||||||||||| | || | | |||||||| | ||| ||| Sbjct 713 TCGTCTAAATTAGCAGGCAACAAGTTGTTCT-T-TA-T-TGCATAACTAGT-GTA--GAG 765 Query 776 Catatatatttgctcttaagtatatatttttattttacagtctttcctttcatttatttt 835 ||||||| || ||||| |||||||||||||||||| |||| ||||||||| ||||||||| Sbjct 766 CATATAT-TT-GCTCT-AAGTATATATTTTTATTT-ACAGCCTTTCCTTTTATTTATTTT 821 Query 836 ccttaCGGTTGTAAAAAGAATCGTTGCTTCTCTATT 871 |||||||||||||||||||||||||||||||||||| Sbjct 822 CCTTACGGTTGTAAAAAGAATCGTTGCTTCTCTATT 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42498088362 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5