BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474174
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50450.1 | Symbols: | Saccharopine dehydrogenase | chr1:18... 2194 0.0
> AT1G50450.1 | Symbols: | Saccharopine dehydrogenase | chr1:18687785-18690371
REVERSE LENGTH=1427
Length=1427
Score = 2194 bits (1188), Expect = 0.0
Identities = 1282/1329 (96%), Gaps = 0/1329 (0%)
Strand=Plus/Plus
Query 1 GGGAGGGAGAGAGAATGGCTCGAGCTCTGCTGCTGCAACCGTACAGAGCGACGGTGCGAG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GGGAGGGAGAGAGAATGACTCGAGCTCTGCTGCTGCAACCGTACAGAGCGACGGTGCGAG 69
Query 61 CAGCTTCATCTAGCGAAACGAAATACGACGGCGTTCCGGAGGTTAAGCTCTCGGATCCTA 120
||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 70 CAGCTTCATCTAGGGAAACGCAATACGACGGCGTTCCGGAGGTTAAGTTCTCGGATCCTA 129
Query 121 CCCGGAACTACCGGGTCTTGGTGTTGGGTGGAACGGGTCGGGTCGGCGGGTCTACTGCTA 180
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 130 GCCGGAACTATCGGGTCTTGGTGTTGGGTGGAACGGGTCGGGTCGGTGGGTCTACTGCTA 189
Query 181 CTGCTCTCTCTAAGTTATGTCCCAAGCTAAAAATCGTCGTCGGTGGACGCAACAGAGAGA 240
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 190 CTGCTCTTTCTAAGCTATGTCCTGAGCTAAAAATCGTCGTCGGTGGACGCAACAGAGAGA 249
Query 241 AAGGTGAAGCAATGGTGGCTAAATTGGGAGAGAATTCTGAGTTTGCTCAAGTAGATATCA 300
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 250 AAGGTGAAGCAATGGTGGCTAAGCTGGGAGAGAATTCTGAATTTTCTCAAGTAGATATCA 309
Query 301 ATGACACTAAGATGCTTGAAACAAGTTTAAGAGACGTAGATCTTGTAGTCCATGCCGCTG 360
|||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 310 ATGATGCTAAGATGCTTGAGACAAGTTTAAGAGACGTTGATCTTGTAGTCCATGCCGCTG 369
Query 361 GACCATTCCAGCAAGCTCCTCGATGCACTGTTCTTGAAGCTGCCATAAAGACCAAGACTG 420
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GACCATTCCAACAAGCACCTCGATGCACTGTTCTTGAAGCTGCCATAAAGACCAAGACTG 429
Query 421 CATATCTTGATGTTTGTGACGACACAAGCTATGCTTTCCGTGCAAAATCTCTTGAAGCTG 480
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CATATCTCGATGTTTGTGATGACACAAGCTATGCTTTCCGTGCAAAATCTCTTGAAGCTG 489
Query 481 AGGCAATTGCTGCGAATATCCCGGCGTTAACAACAGCTGGAATATATCCAGGAGTTAGCA 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AGGCAATTGCTGCGAATATTCCGGCGTTAACAACAGCTGGAATATATCCAGGAGTTAGCA 549
Query 541 ATGTGATGGCGGCAGAAATGGTCGCTGCAGCAATAAGCGAAGACAAAGGAAAACCAGAGA 600
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 550 ATGTGATGGCGGCTGAAATGGTCGCTGCAGCAAGAAGCGAAGATAAAGGAAAACCAGAGA 609
Query 601 AATTGAGGTTCTCTTATTACACAGCAGGCACTGGCGGTGCAGGTCCTACAATATTAGCAA 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AATTGAGGTTCTCCTATTACACAGCAGGCACTGGCGGTGCAGGTCCTACAATATTAGCAA 669
Query 661 CGAGTTTTCTACTACTCGGAGAGGAAGTTACTGCATATAAACAAGGAGAGAAGGTGAAAC 720
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 670 CGAGTTTTCTACTTCTTGGAGAGGAAGTTACTGCATATAAACAAGGAGAGAAGGTAAAAC 729
Query 721 TAAGACCCTACAGTGGAATGATAACCGTGGATTTCGGAAAAGGCATCCGGAAAAGAGATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TAAGACCCTACAGTGGAATGATAACCGTGGATTTCGGAAAAGGCATCCGGAAAAGAGATG 789
Query 781 TTTATCTTTTGAATTTGCCAGAGGTTAGATCAACTCATGAAGTTCTAGGAGTGCCAACTG 840
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 790 TTTATCTTTTGAATTTGCCAGAGGTGAGATCAACTCATGAAGTTCTAGGAGTGCCAACTG 849
Query 841 TCGTTGCTCGATTCGGCACAGCTCCTTTCTTTTGGAACTGGGGAATGGAGATAATGACAA 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 850 TCGTTGCTCGATTCGGCACAGCTCCTTTCTTCTGGAACTGGGGAATGGAGATAATGACAA 909
Query 901 AACTCTTACCATCGGAGGTCCTTAGAGACAGAACCAAAGTCCAACAAATGGTAGAGCTGT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 910 AACTCTTACCATCGGAGGTCCTTAGAGACAGAACCAAAGTCCAACAAATGGTAGAGCTTT 969
Query 961 TTGACCCTGTCGTTAGAGCCATGGATGGCTTTGCTGGAGAGCGTGTCTCGATGAGGGTTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 970 TTGACCCTGTCGTTAGAGCCATGGATGGCTTTGCTGGAGAGCGTGTCTCAATGAGGGTTG 1029
Query 1021 ACTTGGAGTGCTCGGATGGACGGACCACAGTTGGGTTATTTAGTCATAAAAAACTATCCG 1080
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1030 ATTTGGAGTGCTCGGATGGACGGACCACAGTTGGGTTATTTAGTCATAAAAAACTATCAG 1089
Query 1081 TATCCGTTGGAGTTTCAACCGCGGCTTTTGTTGTAGCAATGCTTGAAGGAAGCACACAGC 1140
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 1090 TATCCGTTGGAGTTTCGACCGCAGCTTTTGTTGCAGCAATGCTTGAAGGAAGCACACAAC 1149
Query 1141 CAGGGGTTTGGTTTCCAGAAGAGCCTCAAGGGATCGCAGTAGAGGCAAGGGAAGTTCTTC 1200
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1150 CAGGGGTTTGGTTTCCAGAAGAGCCTCAAGGGATCGCAGTGGAAGCAAGGGAAGTTCTTC 1209
Query 1201 TCAAACGTGCATCACAAGGAACATTCAATTTCATACTGAATAAGCCACCCTGGATGGTTG 1260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 TCAAACGTGCATCACAAGGAACATTCAATTTCATACTGAACAAGCCACCCTGGATGGTTG 1269
Query 1261 AGACCGAGCCGAAGGAGGTGGTTTTAGGGATATATGTATGAGTTCGACCGAGGATGAAGA 1320
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 1270 AGACCGAGCCGAAGGAGGTGGTTTTAGGGATATACGTATGAGTTCGACTGAGGAAGAAGA 1329
Query 1321 AACATAGAT 1329
|||||||||
Sbjct 1330 AACATAGAT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5