BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474178
Length=2858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family... 4458 0.0
AT1G50970.1 | Symbols: | Membrane trafficking VPS53 family pro... 972 0.0
> AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family
protein | chr1:18707990-18715935 REVERSE LENGTH=2907
Length=2907
Score = 4458 bits (2414), Expect = 0.0
Identities = 2574/2654 (97%), Gaps = 0/2654 (0%)
Strand=Plus/Plus
Query 205 ACAGAGGCATCACTTTCTGGCGTTGAGCCCCTTATGCAAAAGATTCAGGGTGAGATTCGG 264
||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 239 ACAGAGGCATCGCTAACTGGCGTTGAGCCACTTATGCAAAAGATTCAGGGTGAAATTCGG 298
Query 265 CGGGTTGATGCTAGCATACTCTCTGCTGTTCGTCAACAGAGTAACTCTGGAACTAAAGCT 324
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 299 CGGGTCGATGCTAGCATACTCTCTGCTGTTCGTCAACAGAGTAATTCGGGAACTAAAGCT 358
Query 325 AAAGAAGATCTTGCTGATGCTACACGTGCTGTGGAGGAACTCTCTCATAAGATTCAAGAG 384
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 AAAGAAGATCTTGCTGATGCTACGCGTGCTGTGGAGGAACTCTCTCATAAGATTCAAGAG 418
Query 385 ATAAAATCCAAAGCTGAGCAAAGTGAAGCGATGGTTCAAGAAATATGCCGTGACATTAAG 444
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 ATAAAATCCAAAGCTGAGCAAAGTGAAGCAATGGTTCAAGAAATATGCCGTGACATTAAG 478
Query 445 AAGTTAGATTTTGCAAAGAAGAACATAACCACGACCATCACTGCCCTTCATCGCCTCACA 504
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 479 AAGTTAGATTTTGCAAAGAAGAACATAACCACGACAATCACTGCCCTTCACCGCCTCACA 538
Query 505 ATGTTAGTCTCTGCTGTTGAACAGCTTCAGGTGATGGCGTCAAAAAGACAATACAAGGAG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTTAGTCTCTGCTGTTGAACAGCTTCAGGTGATGGCGTCAAAAAGACAATACAAGGAG 598
Query 565 GCAGCTGCACAGCTGGAGGCTGTAAACCAATTATGTAACCACTTTGAAGCATACAGGGAT 624
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 GCAGCTGCACAGCTCGAGGCTGTAAACCAATTGTGTAACCACTTTGAAGCATACAGGGAT 658
Query 625 GTTCCTAAAATCACGGAGCTCAGAGAAAAGCTTAATAATATAAAGCAAATCCTTAAGTCC 684
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GTTCCTAAAATCACGGAGCTCAGAGAGAAGCTTAATAATATAAAGCAAATCCTTAAGTCC 718
Query 685 CATGTATTTTCGGATTTTTTCAGTTTAGGTACTGGGAAAGAGACAGAGGAAACAAATTTG 744
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CATGTATTTTCTGATTTTTCCAGTTTAGGTACTGGGAAAGAGACAGAGGAAACAAATTTG 778
Query 745 CTACAGAAGTTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAGCCATCTGTGAGGGAA 804
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 CTACAGAAGTTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAACCATCTGTGAGGGAA 838
Query 805 GAGTTGGTAAACAACTTTTGCAGCAGGGAGCTCACCTCATATGAACAAATTTTTGAAGGA 864
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGTTGGTAAATAACTTTTGCAGCAGGGAGCTCACCTCATATGAACAAATTTTTGAAGGA 898
Query 865 GCTGAATTGGCAAAGTTGGATAAGACAGAGCGGAGGTATGCTTGGATAAAGCGTCGAATC 924
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 GCTGAATTGGCAAAGTTGGATAAGACAGAGCGGAGATATGCTTGGATAAAGCGTCGAATC 958
Query 925 CGAACAAATGAAGAAATTTGGAAGATTTTTCCTGCTTCTTGGCATGTGCCGTATAGGCTA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGAACAAATGAAGAAATTTGGAAGATTTTTCCTGCTTCTTGGCATGTGCCGTATAGGCTA 1018
Query 985 TGCATCCAGTTCTGCAAGCAAACAAGGAAGCAAGTAGAATCTATTCTGGTCAACATGAAA 1044
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCATTCAGTTCTGCAAGCAAACAAGGAAGCAAGTAGAATCTATTCTGGTCAACATGAAA 1078
Query 1045 GAGAAGCCAGTTGTAGCGATATTGCTTCTGGCACTACAAAGGACAGTGGAGTTTGAAAAA 1104
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 GAGAAGCCAGTTGTAGCGATATTGCTTCTGGCACTACAAAGTACAGTGGAGTTTGAAAAA 1138
Query 1105 GAACTTGAAAAGAAATTTGGTGGTGGTGTTCCTACTAAAGATATTGAAGATGACATTGAA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAACTTGAAAAGAAATTTGGTGGTGGTGTTCCTACTAAAGATATTGAAGATGACATTGAA 1198
Query 1165 GAAATTGGTACATGGGAAGATAATAGTCAGAATATATCCAAAATCCGCAAGAAGTATGAA 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 GAAATTGGTACATGGGAAGATAATAGTCAGAATATATCCAAAATCCGCAAGAAATATGAA 1258
Query 1225 AAGAAGTTTGCTGCTAGTCAAGAATCCGAGGAGAATGGTTTTCAACAGGAAAAGACCGGA 1284
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGAAGTTTGCTGCTAGTCAAGAAACCGAGGAGAATGGTTTTCAACAGGAAAAGACCGGA 1318
Query 1285 AACAAAGATTTATCTGTTACTGGAGCTGGGTTTAACTTCCGTGGAATGATCTCTTCCTGC 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AACAAAGATTTATCTGTTACTGGAGCTGGGTTTAACTTCCGTGGAATGATCTCTTCCTGC 1378
Query 1345 TTTGAACCTCATTTAACTCCATATATTGAGTTGGAAGAGAAGACACTTATGGATGACCTG 1404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1379 TTTGAACCTCATTTAACTCCATATATTGAGTTGGAAGAGAAAACACTTATGGATGACCTG 1438
Query 1405 GAGAAAATTGTTCAGGAGGAAACATGGGATATTGAGGATGGAAGTCAAAATAATGTTTTA 1464
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 1439 GAGAAAATTGTTCAGGAGGAATCATGGGATGTTGAGGATGGAAGCCAAAATAATGTTTTA 1498
Query 1465 TCTAGCAGCACACAGCTGTTTTCCAATATAAAGAAGAGCTTGAAACGTTGTAATACTCTC 1524
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 TCTAGTAGCACACAGCTATTTTCCAATATAAAGAAGAGCTTGAAACGCTGTAATACTCTC 1558
Query 1525 AGTAAGAACCAGACTTTATTCAATTTGTTCAAGGTCTTTCAACGAGTTCTGAAGGCCTAT 1584
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1559 AGTAAGAACCAGACTTTATTCAATTTGTTCAAGGTCTTTCAACGAGTTTTAAAGGCCTAT 1618
Query 1585 GCTACAAAGCTATTTGGTAAGCTCCCAAAAGGAGGCACTGGTATCGTTGCCGCAGCCACA 1644
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GCTACAAAGCTATTTTTTAAGCTCCCAAAAGGAGGCACTGGTATCGTTGCCGCAGCCACA 1678
Query 1645 GGCATGGATGGACAGATAAAGGTCTCAGAGAGAGATGAAAGGGTGATATGCTACATAGTT 1704
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1679 GGCATGGATGGACAGATAAAGGTCTCGGAGAGAGATGAAAGGGTGATATGCTACATAGTT 1738
Query 1705 AATTCTGCTGAGTATTGCCACAAAACATCTGGTGAACTGGCAGAGAACGTCTCAGAAATT 1764
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1739 AATTCTGCTGAGTATTGCCACAAAACATCTGGTGAACTGGCAGAAAACGTCTCAGAAATT 1798
Query 1765 ATTGACCCACATTATGCTGATGGTGTAGACATGTCAGAGGTCCAGGATGAATTTTCAGCC 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATTGACCCACATTATGCTGATGGTGTAGACATGTCAGAGGTCCAGGATGAATTTTCAGCC 1858
Query 1825 GTCATAACAAAAGCGTTGGTAACGCTGGTCCTTGGATTTGAGACGAAATTTGACACAGAA 1884
|||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1859 GTCATAACGAAAGCATTGGTAACGCTGGTCCTTGGACTTGAGACTAAATTTGACACAGAA 1918
Query 1885 ATGGCAGCGATGACACGTGTTCCTTGGAGCACACTTGAGAGTGTGGGTGACCAGTCTGGG 1944
||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1919 ATGGCAGTGATGACACGTGTTCCATGGAGCACACTTGAGAGTGTTGGTGACCAGTCTGGG 1978
Query 1945 TACGTGAATGGAATAAATACAATCCTTAGCGGCAGCATACCTGTCCTCGGGAAACTTCTA 2004
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TACGTGAATGGAATAAATACAGTCCTTAGCGGCAGCATACCTGTCCTCGGGAAACTTCTA 2038
Query 2005 ACACCAGTTTACTTCCAGTTTTTCCTCGACAAGCTGGCATCATCCCTCGGACCACGGTTC 2064
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2039 ACACCAGTTTACTTCCAGTTTTTCCTTGACAAGCTGGCATCATCCCTAGGACCACGGTTC 2098
Query 2065 TATGCTAATATTTTCAGATGCAAGCAACTATCCGAAACTGGAGCTCAACAGATGTTACTG 2124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TATGCTAATATTTTCAGATGCAAGCAACTATCCGAAACTGGAGCTCAACAGATGTTACTA 2158
Query 2125 GATACGCAAGCCGTGAAGTCGATTCTACTAGAAATTCCTTCCCTTGCCAGACAGACTTCA 2184
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2159 GATACGCAAGCTGTGAAGTCGATTCTACTAGAAATTCCTTCCCTTGCCAGACAGACCTCA 2218
Query 2185 ACTGCTGCCAGCTATTCCAAATTTGTGAGCCGTGAAATGAGCAGAGCTGAAGCACTCCTT 2244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 ACTGCTGCCAGCTATTCCAAATTTGTGAGCCGTGAAATGAGCAGAGCTGAAGCACTCCTT 2278
Query 2245 AAGGTCATACTATCCCCAATCGATTCAGTGGCAGACACTTATCGTGCACTGTTTCCGGAA 2304
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2279 AAGGTCATACTATCCCCAATCGACTCAGTGGCAGACACTTATCGTGCACTGTTTCCGGAG 2338
Query 2305 GGAACACCCATGGAGTTTCAGCGCATCTTGGAACTTAAGGGTCTTAAGAAAGCTGATCAG 2364
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2339 GGAACGCCCATGGAGTTTCAACGCATCTTAGAACTTAAGGGTCTTAAGAAAGCTGATCAG 2398
Query 2365 CAGAGTATACTTGATGATTTCAATAAGCATGGCCCAGGATTCACACAACAGTCGGTTGCA 2424
||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 2399 CAGAGTATACTAGATGATTTCAACAAGCATGGTCCAGGATTCACACAGCAGTCGGTTGCA 2458
Query 2425 GCGGCAATGCCACAACCGATGCCAACCCCACCTGCACCACCACTGGCAATCACTAATCCG 2484
|| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2459 GCAGCAATGCCACAACCAATGCCAACCCCACCTGCACCACCATTGGCAATCACTAATCCG 2518
Query 2485 GCTACAGCTGCTGGGTTCATAGCAAACAGCGAGGATGTTTTAACCAGAGCAGCTGCTCTT 2544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 GCTACAGCTGCAGGGTTCATAGCAAACAGCGAGGATGTTTTAACCAGAGCAGCTGCTCTT 2578
Query 2545 GGCAGAGGAGCTGCAAGCACTGGCTTCAAGAAGTTCATTGCTCTTACGGAAGCTGCCAAA 2604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2579 GGCAGAGGAGCTGCAAGCACTGGCTTCAAGAAGTTCATTGCTCTTACCGAAGCTGCCAAA 2638
Query 2605 GACCGCAAAGATGGGCCTTTAAGGAGACTCTTCAACGCATGATTTGTTTCTTTTCTGCGT 2664
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 2639 GACCGCAAAGATGGGCCTTTAAGGAGACTCTTCAACGCATGATTTGTTCCTTTACTACCT 2698
Query 2665 CATCTCAACTTTTGACTTATGCAATTTCCACCTTTGTTTCCCTCTGTGTTTAAATGCACT 2724
||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 2699 CATCTCAACTTTTGATTTATGCAATTCCCACCTTTGTTTCCTTCTGTATTTAAATGCACT 2758
Query 2725 TGTTTCTTTGTTTCCCTGGTTATGTGTATATCAGAGATTCATAGTGAATAACGAGTTTTC 2784
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2759 TGTTTCTTTGTTTTCCTGGTTATGTGTATATCAGAAATTCGTAGTGAATAACGAGTTTTC 2818
Query 2785 TCAGGGTGCGGATGTATCTTAGTTGTTTATTGCATTCTTTGTTGAGAAACGTTACGAACA 2844
| | ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 2819 TTACGGTGCGGATGTATCTTAGTTGTTTACTGCATTCTTTCTTGAGTAACGTTACGAACA 2878
Query 2845 CTTTCTTGAACTAA 2858
||||||||||||||
Sbjct 2879 CTTTCTTGAACTAA 2892
Score = 207 bits (112), Expect = 4e-52
Identities = 177/204 (87%), Gaps = 21/204 (10%)
Strand=Plus/Plus
Query 6 AAGGACCGATCCGATCTCCGTCGCCGGCGATCATCTCCGCCGTTTGCTGTTGTTCTTCCT 65
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 2 AAGGACCGATCCGATCTCCGTCGCCGGCGATCATCGCCGCCATTTGCTCTTGTTCTTCCT 61
Query 66 CACTCTTCTCTGCTCCGCGTtctctctctctctctTTCATACTCATTTTTCATTTCGAGT 125
|| | | | |||| | ||||||||||||||||||||||||||||||||
Sbjct 62 CA------T-T--TACGCG-------T-TCTCTCTTTCATACTCATTTTTCATTTCGAGT 104
Query 126 GATTTT-GATTTCATCATACAAATTACAAAGAGCCATGGATAAGTCGAGTGCTTTAGAGT 184
|||||| | ||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 105 GATTTTTGGTTTTATCATACAAATTACAA-G--CCATGGATAAGTCGAGTGCTTTAGAGT 161
Query 185 ATATCAACCAGATGTTCCCAACAG 208
||||||||||||||||||||||||
Sbjct 162 ATATCAACCAGATGTTCCCAACAG 185
> AT1G50970.1 | Symbols: | Membrane trafficking VPS53 family protein
| chr1:18896323-18900268 FORWARD LENGTH=1710
Length=1710
Score = 972 bits (526), Expect = 0.0
Identities = 839/988 (85%), Gaps = 30/988 (3%)
Strand=Plus/Plus
Query 160 ATGGATAAGTCGAGTGCTTTAGAGTAT-ATCAACCAGATGTTCCCAACAGAGGCATCACT 218
||||| || ||||||| ||| || | | |||||||||||||||||| ||| || || ||
Sbjct 1 ATGGACAAATCGAGTGGTTTGGA-TTTCATCAACCAGATGTTCCCAGTAGAAGCTTCTCT 59
Query 219 TTCTGGCGTTGAGCCCCTTATGCAAAAGATTCAG-GGTGAGATTCGGCGGGTTGATGCTA 277
||| | |||||| | |||||||||||||| | | ||||||||||| ||||||||||
Sbjct 60 ATCTTGTGTTGAGTCTTTTATGCAAAAGATT-TGTGACGAGATTCGGCGAGTTGATGCTA 118
Query 278 GCATACTCTCTGCTGTTCGTCAACAGAGTAACTCTGGAACTAAAGCTAAAGAAGATCTTG 337
||| | ||| |||| |||||||| ||||||| ||||||| |||||||||| |||||
Sbjct 119 CCATTTTAGCTGTTGTTAGTCAACAGGGTAACTCCGGAACTAGAGCTAAAGAAAATCTTA 178
Query 338 CTGATGCTACACGTGCTGTGGAGGAACTCTCTCATAAGATTCAAGAGATAAAATCCAAAG 397
|||||| | | |||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 179 ATGATGCCATATGTGCTGCGGAGGAACTCTCTCATAAGATACAAGAGATAAAATCAAAAG 238
Query 398 CTGAGCAAAGTGAAGCGATGGTTCAAGAAATATGCCGTGACATTAAGAAGTTAGATTTTG 457
| || |||| ||||| ||||| ||||| |||||| | |||||||| |||||||||||||
Sbjct 239 CCGAACAAACCGAAGCAATGGTCCAAGACATATGCAGCGACATTAAAAAGTTAGATTTTG 298
Query 458 CAAAGAAGAACATAACCACGACCATCACTGCCCTTCA-TCGCCTCACAATGTTAGTCTCT 516
|||||||||||||||||||| | ||||||| ||| | |||||||||||||||||| |||
Sbjct 299 CAAAGAAGAACATAACCACGGCGGTCACTGCTCTT-AGTCGCCTCACAATGTTAGTGTCT 357
Query 517 GCTGTTGAACAGCTTCAGGTGATGGCGTCAAAAAGACAATACAAGGAGGCAGCTGCACAG 576
|||||| ||||||||||||||||| |||||||||| |||||||||||||||||| | |||
Sbjct 358 GCTGTTCAACAGCTTCAGGTGATGACGTCAAAAAGGCAATACAAGGAGGCAGCTACGCAG 417
Query 577 CTGGAGGCTG-TAAACCAATTATGTAACCACTTT-GAAGCATACAGGGATGTTCCTAAAA 634
|||||||| | ||||| || ||||||| || ||| ||||||||| |||| |||||||||
Sbjct 418 CTGGAGGC-GATAAACGAACTATGTAATCA-TTTCAAAGCATACATGGATCTTCCTAAAA 475
Query 635 TCACGGAGCTCAGAGAAAAGCTTAATAATATAAAGCAAATCCTT-AAGTCCCATGTATTT 693
| | ||||||||||||||| ||||| |||||||| ||||| || |||| ||||||||||
Sbjct 476 TTATGGAGCTCAGAGAAAAACTTAAGAATATAAAACAAAT-TTTAAAGTTCCATGTATTT 534
Query 694 TCGGATTTTTTCAGTTTAGGTACTGGGAAAGAGACAGAGGAAACAAATTTGCTACAGAAG 753
|| ||||||| ||| ||||||||||||| ||||||||||||| ||||||| |||||
Sbjct 535 TCTGATTTTTCCAGCTTAGGTACTGGGACAGAGACAGAGGAATTGTTTTTGCTAAAGAAG 594
Query 754 TTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAGCCATCTGTGAGGGAAGAGTTGGTA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 TTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAGCCATCTGTGAGGGAAGAGTTGATA 654
Query 814 AACAACTTTTGCAGCAGGGAGCTCACCTCATATGAACAAATTTTTGAAGGAGCTGAATTG 873
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||
Sbjct 655 AACAACTTTTGCAGCAGGGAGCTAACCTCATATGAACAAATTTATGTAGGAGCTGAACTG 714
Query 874 GCAAA-GTTGGAT-AAGACAGAGCGGAGGTATGCT-TG-GATAAAGC-GTCGAATCCG-A 927
||| ||||||| || | ||||| || ||| | | | ||| | ||| |||||| |
Sbjct 715 A-AAACGTTGGATGAA-ATAGAGCTGA--TATACAATCAGCTAA-GTTGTCTAATCCGCA 769
Query 928 ACAAATGAAG-AAATTTGGAAGATTTTTCCTGCTTCTTGGCATGTGCCGTATAGGCTATG 986
| |||| ||| ||| | ||| ||||||||||||||| ||||||||||| ||||| |||||
Sbjct 770 A-AAATCAAGGAAAGT-GGACGATTTTTCCTGCTTCATGGCATGTGCCTTATAGACTATG 827
Query 987 CATCCAGTTCTGCAAGCAAACAAGGAAGCAAGTAGAATCTATTCTGGTCAACATGAAAGA 1046
||||||||| ||| | |||||||| ||||||||||||||||||||||||| |||||||
Sbjct 828 CATCCAGTTGAGCAGGAAAACAAGGGTGCAAGTAGAATCTATTCTGGTCAACCTGAAAGA 887
Query 1047 GAAGCCAGTTGTAGCGATATTGCTTCTGGCACT-ACAAAGGACAG-TGGAGTTTGAAAAA 1104
|||| ||| ||||| | ||||||||||| ||| | ||||||| | | ||||||||||
Sbjct 888 GAAGTCAGATGTAGAAAAATTGCTTCTGGAACTGA-AAAGGAC-GCTAGAGTTTGAAAGG 945
Query 1105 GAACTTGAAAAGAAATTTGGTGGTGGTG 1132
|||||||||| |||||||||||||||||
Sbjct 946 GAACTTGAAATGAAATTTGGTGGTGGTG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142022615633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5