BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474208 Length=3499 Score E Sequences producing significant alignments: (Bits) Value AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18... 5437 0.0 AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:71... 2093 0.0 > AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839107-18844559 FORWARD LENGTH=3569 Length=3569 Score = 5437 bits (2944), Expect = 0.0 Identities = 3347/3536 (95%), Gaps = 50/3536 (1%) Strand=Plus/Plus Query 1 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACAAGCTCGGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 19 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACTAGCTCGGAA 78 Query 61 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTGGACACT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 79 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTCGTCACT 138 Query 121 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 198 Query 181 ACAATAACcctcttcttcgccacttatctccttcctcttcttgggtttctcgttcctcct 240 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 199 ACAATAACCCTCTTCTTCGCCACTTATCTCCTTCCTCTTCCTGGGTTTCTCGTTCCTCCT 258 Query 241 ctcgcttctcttcttctccactcccttcctttctctttccttgccgtagaacccttcttc 300 ||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 259 CTCGCCTCTCTTCTTCTCCACTCCCTTCCTTCCTCTTTCCTTGCCGTCGAACCCTTCTTC 318 Query 301 AAAGGAAATTATCTTCCACAGAGGGAAATGTCGGTTATTCG-ACTACTACAGTTTGTCAG 359 |||||||| || ||||||| || |||||||||||||||| | |||||||||||||||||| Sbjct 319 AAAGGAAACTAGCTTCCACTGATGGAAATGTCGGTTATT-GTACTACTACAGTTTGTCAG 377 Query 360 GGATTTCAGCATCCGGGTCATCAACGGTCATCTTCTGTTGTGCTTAACGGAGAGTGGGAA 419 |||||||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||| Sbjct 378 GGATTTCAGCATTCGGTTCATCAACGGTCGTCTTCTGTTGTGTTTAACGGAGAGTGGGAA 437 Query 420 CTTCGATCCGAATCCAACAAGGTAAGGATGGTTCCTAAGATAATCAAGG-TGGCAAATCA 478 |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| |||||| Sbjct 438 CTTCGATCGGAATCTAACAAGGTAAGGATGGTTCCTAAGATTATCAAGGTTGG-AAATCA 496 Query 479 GACGGAAGTTGCTGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 538 |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 GACGGAGGTAGCCGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 556 Query 539 AAATAAGCTTAGAGAAAGAAATGGTCAGATTGCTAGAAACCTCGATGACAGTGGATATTT 598 |||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| Sbjct 557 TAATAAGCTTAGAGAAAGAAATGGTCAAATTGCTAGAAACCTTGATGACAATGGTTATTT 616 Query 599 CAATGGCTCTGTCCCAGTTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 658 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 CAATGGCTCTGTCCCAATTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 676 Query 659 TTATGAGTTCAAACCCAGA-GG-----TA---ACACTACTGTTACACTCAATAAGGAATT 709 |||||||||||| |||||| || || |||||||| |||||||||||||||||| Sbjct 677 TTATGAGTTCAAGCCCAGAGGGACCACTAGGTCCACTACTGCTACACTCAATAAGGAATT 736 Query 710 GATTGGCGTTACCCAATCTGAACCTGTTGTGTCATTGCCAAGCAAGAGTTTAGATGTTGG 769 ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 737 GATTGGCATTACCCAATCTGAACCTGTTGTGTCATTGCCAAGGAAGGGTTTAGATGTTGG 796 Query 770 AGATAATATGGATGTAAATCCTAGTGGAGAAGCAAAACGGAGACCTCTTATAAGCGGGAA 829 |||||||||||||||||||||| ||||| | || || ||||||||||||||||| || Sbjct 797 GGATAATATGGATGTAAATCCTAAAGGAGAGGGAATACAGAGACCTCTTATAAGCGATAA 856 Query 830 GTCTTCTGGTACCGCAAACGGCAACAAGAATACAGTTGCCATTTCCAAAGTGGAGAAAAG 889 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| Sbjct 857 GTCTTCTGGTACCGCAAATGGAAACAAGAATACTGTTGCCATTTCCAAAGTGGAGAGAAG 916 Query 890 CACTGAACCTTCCAATGTCCGTGAAAACCTTAGGAAAATATATGACAAGGTTCTCGTTGT 949 |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 917 CACTGAACCTTCGAATGTCCGTGAAAACCTTGGGAAAATATATGACAAGGTTCTCATTGT 976 Query 950 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCA 1009 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 977 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCGTGAATCAGTTTAGGAATCA 1036 Query 1010 TGTCCATTCTTGTGATACAGAGGTGTCCGGGATTGAGGTGAAGGAAGAAACGCCTGTCGA 1069 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1037 TGTCCATTCCTGTGATACAGAGGTGTCCGGGATTGAGGTTAAGGAAGAAACGCCTGTCGA 1096 Query 1070 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGTATGG 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1097 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGAATGG 1156 Query 1130 AAAATCATGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1189 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 AAAATCGTGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1216 Query 1190 TAAACCGTATTTTGAAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAGTTTCGATAG 1249 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1217 TAAACCATATTTTGAAGACTCGTTCATCAGAAAAGTCTGGCACAACTACAGTTTCGATAG 1276 Query 1250 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1277 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1336 Query 1310 GGCACGATTATGGGATTCTGCACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTAC 1369 |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| Sbjct 1337 GGCACGATTATGGGATTCTGCACGGCGGATAAAAGGTGGTTATTCGCTTGAAGCGCTTAC 1396 Query 1370 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAA 1429 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1397 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAA 1456 Query 1430 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1516 Query 1490 AATGGTTGTCATTCCCCCTGTCGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1549 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1517 AATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1576 Query 1550 ATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1609 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1577 ATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1636 Query 1610 GCAACTGATGGATTGGCGTCTTGATGGAAAGCCAGTTTTAGAAAGGACAATGTTGGATTT 1669 |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1637 GCAATTGATGGATTGGCATCTTGATGGAAAGCCAGTTTTAGGAAGGACAATGTTGGATTT 1696 Query 1670 TTACCATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1729 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1697 TTACCATGAGTTCTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1756 Query 1730 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCCGAACAACAAGT 1789 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1757 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCGGAACAACAAGT 1816 Query 1790 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAG 1849 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1817 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAA 1876 Query 1850 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTGTGAA 1909 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1877 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTC--A- 1933 Query 1910 TGGCGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATTGA 1969 || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1934 TGACGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGA 1993 Query 1970 AGTAGGCaaaaaaaCAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAACTGACAG 2029 || ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 1994 AGAAGGCAAAAAAACACCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAG 2053 Query 2030 CCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATGTTTT 2089 |||||||||||| |||||||| ||||||||||||||||| ||| || ||||||||||||| Sbjct 2054 CCCACTGTCAACGGAAAATTTTACTGCCAGTGGTTGGCCCTCTGTAGGTGGGGATGTTTT 2113 Query 2090 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAGATAT 2149 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2114 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATAT 2173 Query 2150 TTCTCTGGAAGAAGTTGCTGAGGATGATGATGCAGATCAAACTTCAAAAACACAAAAGTC 2209 ||||||||||||||||| |||||||||||||| ||| || | ||| ||||||||||||| Sbjct 2174 TTCTCTGGAAGAAGTTGTTGAGGATGATGATGTAGA--AA-CATCAGAAACACAAAAGTC 2230 Query 2210 CAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGCATATGTTGCCTTCGGAGG 2269 ||||||||||| | ||||||||||||| |||||||||| |||||||||||| || ||||| Sbjct 2231 CAAGACAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGG 2290 Query 2270 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGTCATTATGTGAAGTTTGCTCAAT 2329 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2291 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCTCATTATGTGAAGTTTGCTCTAT 2350 Query 2330 AGA-TGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAAGTAATGTATCAGGCAAAG 2388 ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2351 AGACT-CTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAG 2409 Query 2389 ATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2448 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2410 ATGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2469 Query 2449 GGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2508 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2470 GGCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2529 Query 2509 TTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATGGGCAGTTGGAACTCAGAA 2568 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2530 TTGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAA 2589 Query 2569 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTCAAAGCAGGCGGAGATT 2628 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2590 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGATT 2649 Query 2629 TCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTGAAGCTGTAGAAAATGGGC 2688 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGGGC 2709 Query 2689 AAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAGCCACCCGTGCCGTTGTTAA 2748 |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 2710 AAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTAA 2769 Query 2749 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2770 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2829 Query 2809 GGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTC-AGTTGAAGAGGCTCAGGAC 2867 ||||||||||| |||||||||||||||||||||||||||| | | |||| |||||||| Sbjct 2830 GGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGAA 2888 Query 2868 ACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAAGGCGTAAG 2927 |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2889 ACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAAG 2948 Query 2928 AAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGGAAGGTCTCGTAGATTTCCG 2987 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 2949 AAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCCG 3008 Query 2988 AG-GT-ATAAGTCACGTGCGCAGAAGAA-TCATATCCAAAGAGCAGCAATCAACACTCCA 3044 | || | ||||||||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 3009 -GCGTCA-AAGTCACGTGCTCAGA-GAAATCATATCCAAAGAGCAGCAATCAACACTCCA 3065 Query 3045 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGACAAATCAA 3104 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3066 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAA 3125 Query 3105 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTGATCTTGGAA 3164 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3126 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGAA 3185 Query 3165 GGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTTGTGGACTGTATGTCTAAACCC 3224 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3186 GGACCAATTGAATCAGCGGAGATCGCAAAGGACATAGTTGTGGACTGTATGTCTAAGCCC 3245 Query 3225 TTTAACGGAAGGAATATTCTCTCGGTCGATTTATCTGTTGATGCAAAATGTGCTCAGAAC 3284 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3246 TTTAACGGAAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTCAAAAC 3305 Query 3285 TGGTATGCTGCCAAATAGA-A-G-TT-GA-A--GG----A----A-G-A-G--ATTTTTT 3324 ||||||||||||||||||| | | || || | || | | | | | ||||||| Sbjct 3306 TGGTATGCTGCCAAATAGAGAAGCTTAGAGACCGGCCGTAGTTGAAGGAAGCGATTTTTT 3365 Query 3325 GGGTATATTAAGGTTTGGTTTTTGTAAATGTTAGAAAGCCTTGAGAACATTGAGCTGTGT 3384 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 3366 GGGTATATTAAGGTTTGGGTTTTGTAAATGTTAGAAAGCCTTGAGAACGTTGAGCTGTGT 3425 Query 3385 AAATTGTTTTCTCAA-CTCTAATCCTCTAACTTGACGATGTTTGAATGCAAATGTGGTTT 3443 ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 3426 AAATTGTTTTCTCAAACTCTAATCTTCTAACTTGACGATGTTTGAATGCAAAAGTGGTTA 3485 Query 3444 AAGTAACTTAAGAACAATCATGATATTAATGTTGTGGATGGCTTTGTGTAAAATGA 3499 ||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| Sbjct 3486 AAGTAACTTGAGAACAATCATGATATGAATATTGTGGATTGCTTTGTGTAAAATGA 3541 > AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:7168233-7173617 FORWARD LENGTH=3438 Length=3438 Score = 2093 bits (1133), Expect = 0.0 Identities = 2059/2499 (82%), Gaps = 92/2499 (4%) Strand=Plus/Plus Query 855 AAGAATACAGTTGCCATTTCCAAAGTGGAGAAAA-GCACTGAACCT-TC-CAATGTCCGT 911 ||||| |||| |||||||||||||||| |||| |||| ||||| || ||| |||||| Sbjct 719 AAGAAAACAGCAACCATTTCCAAAGTGGA-AAAATGCAC-CAACCTATCGCAA-GTCCGT 775 Query 912 GAAAACCTTAGGAAAATATATGACA-AG-GTTC-TCGTTGTTGATAATGTG-CAAGCTGC 967 | |||||| | ||||||||| | | || |||| | ||||||||||||||| | || ||| Sbjct 776 GCAAACCTCAAGAAAATATA-CA-ATAGAGTTCGT-GTTGTTGATAATGTGTCTAG-TGC 831 Query 968 GAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCATGTCCATTCTTGTGATAC 1027 ||||| ||||||||| |||||||||||| |||||||||| ||||||| |||| ||||| Sbjct 832 AAAGGAAACCGTGGCTCTGCTCATGAATCAATATAGGAATCTTGTCCATGCTTGCGATAC 891 Query 1028 AGAGGTGTCCGGGATTGAGGTGAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATA 1085 |||||| ||| ||||||| ||||| || ||||| ||||| ||||| || || | | || Sbjct 892 AGAGGTATCCAGGATTGATGTGAA-GACTGAAACACCTGTAGACCATGGGGAGA-TGATT 949 Query 1086 TGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGG-GTATGGAAAATCATGCATCTG 1144 ||||||||||| || ||||| |||||||||||||||| | |||| |||||||| ||||| Sbjct 950 TGTTTCAGTATCTATTGTGGATCAGAAGCAGATTTTGGAG-ATGGTAAATCATGTATCTG 1008 Query 1145 GGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCGTATTTT-G 1203 ||| ||||| ||||| |||||||| ||||| | |||| |||||||| || | |||| | Sbjct 1009 GGTAGATGTGCTTGGCGAAAATGGAAGGGATATCCTGGCTGAGTTTAAGCCAT-TTTTCG 1067 Query 1204 AAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGG 1262 ||||||| | ||| |||||||| ||||| |||||||| ||| |||| ||||||||| || Sbjct 1068 AAGACTCATCCATAAAAAAAGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGA 1126 Query 1263 AACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGG 1322 || ||||||| || ||||||||||||||| || || ||||||||||||||||| ||| Sbjct 1127 AATTATGGAATCAAGCTTTCTGGTTTTCATGGTGATACAATGCACATGGCACGATTGTGG 1186 Query 1323 GATTC-TGC-ACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAA 1380 ||||| | | | |||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 1187 GATTCAT-CTA-GACGGATATCGGGTGGTTATTCGCTTGAAGCACTTACAAGTGACCCAA 1244 Query 1381 AAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAAAATTTCGATGA 1440 ||||||||||||| || |||||||||||||||| || || |||||||||| || |||| Sbjct 1245 AAGTTCTTGGGGGAACTGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGA 1304 Query 1441 AGACTATTTTTGGCAAACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAA-TGGTTG- 1497 ||| ||||| ||| || || ||| |||||||||||||||| ||| |||||| ||| || Sbjct 1305 AGAAGATTTTCGGC-AAGGGAAAATTGAAAAAAGATGGATCAGAA-GGAAAATTGG-TGA 1361 Query 1498 TCATTCCCCCTGTCGAAGAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATATTCT 1556 ||||||| ||||| ||||||| | | | || |||||||| ||||||||||| || || Sbjct 1362 TCATTCCTCCTGTTAAAGAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCGTACTCA 1420 Query 1557 GCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAA-C 1614 || |||||| | |||||||| ||||||||||| |||||||||| | ||| |||||||| | Sbjct 1421 GCGTTGGATTCAATAAGCACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAACTGCAAGC 1479 Query 1615 TGATGGATTGGCGTCTTGATGGAAAGCCAGTTT-TAGAAAGGACAATGTTGGATTTTTAC 1673 || | | ||| |||||||||||| | | ||| | |||| || ||||| ||||| ||| Sbjct 1480 -GAAGAAATGGTTTCTTGATGGAAAACTAATTTCAAAAAAGAAC-ATGTTTGATTTCTAC 1537 Query 1674 CATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTT 1733 || || | ||||| ||| |||||||||||||||| ||||||||| | ||||| || ||| Sbjct 1538 CAAGAATATTGGCAACCTTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTT 1597 Query 1734 GTAGATAGAGAGTATCTT-GCTG-AGATAGAGAAAGTAGCCAAAGCCGAACAACAAGTTG 1791 |||||||| || ||| || || | |||| |||| ||||||||||| |||||| || ||| Sbjct 1598 GTAGATAGGGATTAT-TTGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTG 1655 Query 1792 CTG-GTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAGT 1850 ||| | | ||||| ||||||||||| || ||| |||| || ||||||||| |||||| | Sbjct 1656 CTGTTTCG-AGGTTCCGTAATTGGGCTTCAAAGCATTGTCCAGATGCAAAGCATATGAAT 1714 Query 1851 ATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAG-TGTGAA 1909 ||||||||||||| |||||||| || |||||||||||||||||||| ||||| ||| || Sbjct 1715 GTTGGCAGTGACACGCAATTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGT-AA 1773 Query 1910 TGGCGAGG-TGCTTCCAGT-TGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATT 1967 || |||| | |||||| | |||||| || |||||| |||||||| | |||||||| ||| Sbjct 1774 TGATGAGGAT-CTTCCA-TATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATT 1831 Query 1968 GAAGTAGGCaaaaaa-aCAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAA-CTG 2025 |||| ||| |||||| | ||| || || || || || ||||||||||||||||||| | | Sbjct 1832 GAAGAAGG-AAAAAAGAGAGCCACAAAATTCCGGAATATCAAACTGCATAGGATAAGC-G 1889 Query 2026 ACAGCCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATG 2085 |||| || || | |||||||| || |||||| || ||||| ||| | ||||| || Sbjct 1890 ACAGACCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGGCCCTCTGTTAGTGGAGACA 1949 Query 2086 TTTTGAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAG 2145 ||||||| |||||||||||||| ||||| ||||| |||| |||||| | || | || Sbjct 1950 CCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGAATATGACTATATGGAGGGCGTTTTAG 2009 Query 2146 ATATTTCTCTGGAAG--AA-GTTGCTGAGGATGA-TG-A--T-G----CAGATCAAACTT 2193 ||| || ||| |||| || ||| || ||||| || | | | ||||| || || Sbjct 2010 ATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATTTCGCTACCAGAT-GAAGTT 2068 Query 2194 -CAAAAACACAA-AAGTCCAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGC 2251 | |||||||| | || ||| || |||| || | |||||||| |||||||||| ||| Sbjct 2069 GTAGAAACACAACACGT-CAATACCTCTGTTGAATCAGACACATCTGCTTATGGAACAGC 2127 Query 2252 ATATGTTGCCTTCGGAGGGGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGT-CAT 2310 || || ||| || |||||||||||||| |||||||| || || ||||||||||| | ||| Sbjct 2128 ATTTGATGCATTTGGAGGGGGTGAAAGTGGAAAGGAAGCTTGCCATGCTATTGC-TGCAT 2186 Query 2311 TATGTGAAGTTTGCTCAATAGATGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAA 2370 |||||||||||||||| || ||| | || || ||||||||||| ||||| |||||||||| Sbjct 2187 TATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTATCCTTCCTTTACAGGGAA 2246 Query 2371 GTAATGTATCAGGCAAAGATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTG 2430 |||| || ||||| ||||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct 2247 GTAACGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAATATCAACACTGAAACTG 2306 Query 2431 GGCGCTTATCAGCTAGAAGGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGT 2490 | |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 2307 GACGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGT 2366 Query 2491 ACAAGATTCGTAAGGCCTTTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATG 2550 |||| || ||| ||||||| |||| |||||||||||| |||| |||| |||||||||| Sbjct 2367 ACAAAATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATG 2426 Query 2551 GGCAGTTGGAACTCAGAATTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTT 2610 | ||| ||||||| || ||||||||||||||| || |||| ||||||||| |||||||| Sbjct 2427 GACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCGAAAGCATGAAGGAAGCTT 2486 Query 2611 TCAAAGCAGGCGGAGATTTCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTG 2670 ||| ||| || ||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 2487 TCATAGCTGGTGGAGACTTCCACTCAAGAACAGCCATGAATATGTATCCTCATATTCGTG 2546 Query 2671 AAGCTGTAGAAAATGG-GCAAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAG 2729 ||||||| |||||||| | ||||| |||| |||||||||||||||||||| |||| ||| Sbjct 2547 AAGCTGTTGAAAATGGTG-AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAG 2605 Query 2730 CCACCCGTGCCGTTGTTAAAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTT 2789 || || ||||| ||||| ||||||||||||| ||| |||||||||||||| ||||||||| Sbjct 2606 CCGCCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTT 2665 Query 2790 AACTTTTCAATTGCGTATGGGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTCA 2849 ||||| || |||||||||||||| || || || ||||| ||||||||||||||||| ||| Sbjct 2666 AACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCA 2725 Query 2850 -GTTGAAGAGGCTCAGGACACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAA 2908 | ||||| ||||| || ||||| || |||||||| |||||||| |||||||| |||| Sbjct 2726 AGA-GAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAA 2784 Query 2909 ATGGCAAGAAAGGCGTAAGAAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGG 2968 |||||||||| || ||||||||||||||| || | || ||||||| |||||| | || Sbjct 2785 ATGGCAAGAACTACGCAAGAAAGAAGCTATACAAAAAGGGTATGTACTCACTTTGTTGGG 2844 Query 2969 AAGGTCTCGTAGATTTCC-GAGGTATAAGT-CACGTGCGCAGAAGAATCATATCCAAAGA 3026 |||| |||||| ||| || || || || ||||||| || ||||| |||||| | || Sbjct 2845 AAGGGCTCGTAAATTCCCTGAA-TACC-GTTCACGTGCCCAAAAGAACCATATCGAGCGA 2902 Query 3027 GCAGCAATCAACACTCCAGTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTG 3086 ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || ||| || Sbjct 2903 GCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCTG 2962 Query 3087 GAAATATCGACA-AATCAACAGTTGAA-GAAGCTTGGTTGGAGATTGCTTCTACA-GATT 3143 || ||||| | | ||||||| | | || || ||||||||||| |||||||||||| | || Sbjct 2963 GAGATATCAA-ATAATCAACGGCTAAAAGA-GCTTGGTTGGAAATTGCTTCTACAAG-TT 3019 Query 3144 CATGATGAAGTGATCTTGGAAGGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTT 3203 ||||||||||| ||||||||||| |||| ||| |||||||||| ||| || ||||||||| Sbjct 3020 CATGATGAAGTAATCTTGGAAGGACCAAGTGAGTCAGCGGAGAACGCTAAAGACATAGTT 3079 Query 3204 GTGGACTGTATGTCTAAACCCTTTAACGG-AAGGAATATTCTCTCGGTCGATTTATCTGT 3262 ||| |||| |||||| ||||||| ||||| ||| ||||||||||| ||||| |||||||| Sbjct 3080 GTGAACTGCATGTCTGAACCCTTCAACGGCAAG-AATATTCTCTCAGTCGACTTATCTGT 3138 Query 3263 TGATGCAAAATGTGCTCAGAACTGGTATGCTGCCAAATA 3301 |||||| || |||||||||||||||||||||| |||||| Sbjct 3139 TGATGCTAAGTGTGCTCAGAACTGGTATGCTGGCAAATA 3177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 174179626096 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5