BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474224
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) ... 920 0.0
> AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:18927877-18929680 FORWARD
LENGTH=1187
Length=1187
Score = 920 bits (498), Expect = 0.0
Identities = 560/591 (95%), Gaps = 0/591 (0%)
Strand=Plus/Plus
Query 193 AGTGTTGAAGTTGATGGCTTCCTTTGTGATTCAGATGTGATCAAAGAATCAGGCTCGAGG 252
||||||||||| |||||||||||||||||| ||||||||||||||||| || | || |||
Sbjct 451 AGTGTTGAAGTGGATGGCTTCCTTTGTGATGCAGATGTGATCAAAGAACCAAGTTCAAGG 510
Query 253 AAGAGGATCAAAACTGAATCTTGCACTGGTTCTAGCTCTAAAGCTTTTAGGGAGAAACAG 312
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 511 AAGAGGATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAA 570
Query 313 AGACGTGATAGACTAAATGACAAGTTTTCGGAATTGAGTTCCATATTGGAACCTGGGAGA 372
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 571 AGACGTGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGA 630
Query 373 GCTCCAAAAACAGACAAGGTTGCTATTATCAATGATGCGATTCGCATGGTGAATCAAGCA 432
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 631 ACTCCAAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCA 690
Query 433 AGAGACGAAGCGCAGAAACTAAAGGACTTGAATTCAAACCTTCAGGAGAAAATCAAGGAG 492
||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 691 AGAGATGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAG 750
Query 493 TTGAAGGATGAGAAAAACGAGCTGCGTGATGAGAAACAAAAGCTAAAGGTCGAGAAGGAG 552
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 751 TTGAAGGATGAGAAGAACGAGCTGCGTGATGAGAAACAGAAGCTTAAGGTCGAGAAGGAG 810
Query 553 AGAATCGATCAGCAGCTGAAAGCGATTAAGACACAGCCTCAGCCTCAACCTTGTTTCTTA 612
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 811 AGAATCGATCAGCAACTGAAAGCTATTAAGACACAGCCTCAGCCTCAACCTTGTTTCTTA 870
Query 613 CCAAATCCGCCAACACTTTCTCAAGCTCAAGCTCCTGGAAGCAAGCTTGTCCCTTTCACA 672
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CCAAATCCGCAAACACTCTCTCAAGCTCAAGCTCCTGGAAGCAAGCTTGTCCCTTTCACA 930
Query 673 ACTTACCCCGGATTTGCAATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAG 732
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 931 ACTTATCCCGGCTTTGCAATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACCTCACAG 990
Query 733 GACCATGTCCTCCGTCCTCCAGTTGCTTAAAGCTGCTGCCTCTCTCTACTA 783
||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 991 GACCATGTCCTTCGTCCTCCAGTTGCTTAAAGCTGCTGCTTCTCTCTACTA 1041
Score = 183 bits (99), Expect = 2e-45
Identities = 118/127 (93%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 69 GGGAATTAGGAGAATGGTGTCTCCGGAGAACACGAACTGGCTTAGTGATTACCCTTTGAT 128
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 129 GGGAATCAGGAGAATGGTGTCTCCGGAGAATACGAACTGGCTTAGTGATTACCCTTTGAT 188
Query 129 TGATGGTGCTTTCTCTGATCAGAATCCTACCTTCCCTTGGCAGATCGATG-CTTCAGCTA 187
||| |||||||||||||||||||| || || |||||||||||||| |||| || ||||||
Sbjct 189 TGAAGGTGCTTTCTCTGATCAGAACCCCACTTTCCCTTGGCAGATAGATGGCT-CAGCTA 247
Query 188 CTGTCAG 194
|||||||
Sbjct 248 CTGTCAG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5