BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474226
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51110.1 | Symbols: | Plastid-lipid associated protein PAP ... 2121 0.0
> AT1G51110.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr1:18935329-18937665 FORWARD
LENGTH=1462
Length=1462
Score = 2121 bits (1148), Expect = 0.0
Identities = 1357/1456 (93%), Gaps = 22/1456 (2%)
Strand=Plus/Plus
Query 1 AAACTTTAATCATTTTAACAAAAGCTTCACATTTCACAAGCAGCACTAGACAGCAACAAT 60
||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 1 AAAGTTTAATCATTTTAACAAAAG-----C--TTCACAAGCAGCAGTAGACAGCAACAAT 53
Query 61 GGTGGCACTTAGATTCTACACCGTAGAGATGTCGCTACCATGCTTATGTCCATGCCCATC 120
||||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 54 GGTGGCAGTCAGATTCTACGCTGTAGAGATGTCGCTACCATGTTTATGTCCATGCCCATC 113
Query 121 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATACAATCTTCTTAAGACAACAAGCAA 180
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 114 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATTCAATCTTCTTAACACAACAAGCAG 173
Query 181 GAGACTAGATTTGTCTAGAAACTGTAGAACTCTCCGCATCAGTTGTTCATCTTCCTCTAC 240
|||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 174 GAGACTAGGTTTGTCTAGAAACTGTAGAACTCTGCGAATCAGTTGTTCATCTTCATCTAC 233
Query 241 TGTCACTGACCAAACACAACAATCGTCTTTCAACGATGCTGAGTTGAAATTGATTGACGC 300
||||||||||||||| |||||||||||||| || ||||||||||||||| | ||||||||
Sbjct 234 TGTCACTGACCAAACTCAACAATCGTCTTTTAATGATGCTGAGTTGAAACTCATTGACGC 293
Query 301 TTTAATTGGAATTCAGGGCCGTGGCAAATCTGCTTCTCCTGAACAGCTCAATGATGTTGA 360
||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 294 TTTGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAATGATGTTGA 353
Query 361 TTCTGCTGTGAAAGTTCTTGAAGGTTTAGAGGGTATTCAGAATCCTACAGATTCTGACTT 420
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 354 ATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCTACAGATTCTGACCT 413
Query 421 AATCGAAGGCCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATTCA 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 AATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCA 473
Query 481 GAGAACATTTACAGGAGTAGATGTGTTTACTGTGTTTCAAGATGTATACTTGAAGACAAC 540
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 474 AAGAACATTTACAGGAGTTGATGTGTTCACTGTGTTTCAAGATGTATACTTGAAGGCAAC 533
Query 541 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGACTTCATTGGAGAGCTGAAAGT 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 534 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGATTTCATTGGAGAGCTGAAAGT 593
Query 601 TGAGGCAGCTGCGTCGATCAAAGATGGGAAACGGGTTTTATTCCGTTTCGATAGAGCTGC 660
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 594 TGAGGCAGTTGCGTCGATCAAAGATGGGAAACGAGTTTTATTCCGTTTTGATAGAGCCGC 653
Query 661 TTTCT-CTTTAAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGGCTTCTTG 719
||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 654 TTT-TGATTTGAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGACTTCTTG 712
Query 720 GTGATGAGGCAAAAGGTTGGTTAGATACTACGTATTTGTCGCCTTCAGGAAACCTTAGGA 779
||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 713 GTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGA 772
Query 780 TTTCAAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACGGTGCCTAGGCAGA 839
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 773 TTTCTAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGA 832
Query 840 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 892
Query 900 CGACTAATTCTAATCCCGCGGAAGTTGATTACGAGCTTTTCGAAGGAAGCTGGCAAATGA 959
|| ||||||||||| ||||||||| | |||| |||||||| |||||||| ||||||||||
Sbjct 893 CGTCTAATTCTAATTCCGCGGAAGATAATTATGAGCTTTTAGAAGGAAGTTGGCAAATGA 952
Query 960 TTTGGAGTTCACAGATGTTTACAGATAGTTGGATTGAAAATGCAGCCAATGGTCTTATGG 1019
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 953 TTTGGAGTTCACAGATGTATACAGATAGTTGGATTGAAAATGCAGCAAATGGTCTTATGG 1012
Query 1020 GAAGACAGATCATCGAGAAGGATGGAAGAATAAAGTTTGAAGTTAACATCATCCCAACAT 1079
||||||||||||| ||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 1013 GAAGACAGATCATTGAGAAGGATGGGAGGATAAAGTTTGAAGTTAACATCATTCCGGCAT 1072
Query 1080 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACCTAT-AGTTTGAAG 1138
|||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct 1073 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACATATGACTT-GAAG 1131
Query 1139 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAT 1191
Query 1199 ATCGAACTTAAAATTCTGTACACAGATGAGAAGTTGAGGATAAGTCGAGGATTCGACGAC 1258
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1192 ATCGAGCTAAAAATTCTGTACACAGATGAGAAGATGAGGATAAGCCGAGGATTCGATAAC 1251
Query 1259 ATTATCTTCGTGCACATCCGAGAAATTTAGCTGCATTGTTCTAT--G--C-TCTTATTTG 1313
|||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1252 ATTATCTTTGTGCACATCCGAGAAATTTAGCTGCATTGTTCTATCAGAACCTCTTATTTG 1311
Query 1314 AACATGTGAAAAAA--TAGTATGTAAGAAACTGTCAAATGCTTTACAACAATGGAAAGTG 1371
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1312 AACATATGAAAAAAAATAGTATGTAAGAAACTGTCAAATGTTTTACAACAATGGAAGGTG 1371
Query 1372 ATGGTTTAAATTTT-TCTGGTCATCATTAGtttttttGGATGTAACAGGAACCAGAAAAA 1430
|| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATAGTTTAAATTTTCTCTG-T--TCATTAGTTTTTTTGGATGTAACAGGAACCAGAAAAA 1428
Query 1431 ACAAGAAACCACATGA 1446
||||||||||||||||
Sbjct 1429 ACAAGAAACCACATGA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5