BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474229 Length=1626 Score E Sequences producing significant alignments: (Bits) Value AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2302 0.0 > AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943457-18945753 REVERSE LENGTH=1625 Length=1625 Score = 2302 bits (1246), Expect = 0.0 Identities = 1527/1653 (92%), Gaps = 58/1653 (4%) Strand=Plus/Plus Query 1 AAGTTTCTCTCACGTTCTCttttttaattttattttCTCGCCGGATA-AATCCTCCTCTC 59 |||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| |||| Sbjct 1 AAGTTTCTCTCACGTTCTCTTTTTTAATTTTAATTTCTCGCCGGAAACAAT-CTCATCTC 59 Query 60 CCGGCGAACGAAACGTCC-G-GTGGTACT-CTAAACGGAGaaaaaaaaaTAACAAAAGAA 116 |||||||||||||| ||| | |||||||| | |||||||| ||||||||||| |||||| Sbjct 60 CCGGCGAACGAAACTTCCGGTGTGGTACTGC-AAACGGAG--AAAAAAATAACCAAAGAA 116 Query 117 GAGAGAAACTCAAAAGCTACAAAGATGGAATCAGAATTTCAGCAACATCACTTTCTTCTC 176 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 117 GAGAGAAACTCAAAAGCTACTAAGATGGAATCAGAATTCCAGCAACATCACTTCCTTCTC 176 Query 177 CACGATCATCAACATCAAAGACCTAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236 |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 177 CACGATCATCAACACCAGAGACCAAGAAACTCAGGATTGATTCGTTACCAATCAGCACCA 236 Query 237 AGTTCGTATTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACGAGT 296 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 237 AGTTCGTACTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACAAGT 296 Query 297 CCTGAAACAGAGCGAATCTTATCTGGGTTTTTACAAACCACCGACACAAGCAATAACGTT 356 |||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||| Sbjct 297 CCTGAAACTGAGCGAATCTTATCTGGCTTTTTACAAACCACCGACACAAGCGACAACGTT 356 Query 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACAGAGAAGAAACCTCCGGAAGTG 416 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 357 GATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACTGAGAAGAAACCTCCGGAAGTT 416 Query 417 AAAACAGAGGAGGAAGATACAGAGATTCCGGTGACT------GTGACGGCGATGGA-G-- 467 ||||||||||| |||||| | || |||||||||||| | |||||||||||| | Sbjct 417 AAAACAGAGGACGAAGATGCTGAAATTCCGGTGACTGCGACGGCGACGGCGATGGAGGTT 476 Query 468 GTTGTTTCCGGTGA----G--ATTTCAGTGAATCCTCAAGAATCGATTGGGTATGTAGCT 521 |||||||||||||| | || |||||||||||| ||| ||||||||||||||| ||| Sbjct 477 GTTGTTTCCGGTGATGGTGAAATCTCAGTGAATCCTGAAGTATCGATTGGGTATGTGGCT 536 Query 522 TCGGTTTCGAGGAATTTAGGTCAGAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 581 |||||||| | | | ||||||||||||||||||||||||||||||||||||| Sbjct 537 TCGGTTTC---G-----A-G---GAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCG 584 Query 582 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCCTCCATTGATGTT 641 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 585 GTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCATCCATTGATGTT 644 Query 642 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGGTG 701 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 645 GAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGATG 704 Query 702 AGTACAAGCAATAATGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 761 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 AGTACAAGCAATACTGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACT 764 Query 762 TCTAGAGCGATGAGTCCGATATCTGAGGTTGATGTTAAGCCCGGGTTT-TCGGCTAGATT 820 |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||| ||||||| Sbjct 765 TCTAGAGCGATGAGTCCGATCTCTGAGGTTGATGTTAAACCCGG-TTTCTCGTCTAGATT 823 Query 821 GCCTCCTCGGACACTTTCCGGTGGGTTTAATCGTTCGTTTGGGAATGAAGGGTCTGCTTC 880 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 824 GCCTCCTCGGACGCTTTCCGGTGGGTTTAATCGTTCTTTTGGGAATGAAGGGTCTGCTTC 883 Query 881 GTCTAAGCTTACTGCTATTGCAAGGACTCAATCTGGAGGTCTAGATCAATACAAAACCAA 940 || |||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 884 TTCCAAGCTTACAGCTCTTGCTAGGACCCAATCTGGAGGTCTAGATCAATACAAAACCAA 943 Query 941 GGAAGAGGATTCAGCAAGTAGACGTCCCCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1000 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 944 GGATGAGGATTCAGCAAGTAGACGTCCTCCTTTGGCACATCACATGAGTTTGCCCAAGTC 1003 Query 1001 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCCTGTAAGATCAGAGCCAAGCG 1060 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1004 TTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCATGTAAGATCAGAGCCAAGCG 1063 Query 1061 GGGTTGTGCAACTCATCCTCGCAGCATCGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1120 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1064 GGGTTGTGCAACTCATCCTCGAAGCATAGCCGAGAGGGTGAGAAGAACCAAGATCAGTGA 1123 Query 1121 AAGGATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1180 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1124 AAGAATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGA 1183 Query 1181 CATGTTGGATCTTGCGGTTCAGTACATCAAGGACCTGCAAGAACAAGTGAAGACGCTCGA 1240 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1184 CATGTTGGATCTTGCGGTTCAATACATCAAGGACCTGCAAGAACAAGTGAAGGCGCTCGA 1243 Query 1241 AGAGACTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTTGGAGTATGCGAG 1300 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1244 AGAGAGTCGGGCAAGATGTAGATGCTCTAGTGCGTGAAACTAGAAGTGGGAGTATGCGCG 1303 Query 1301 AGTGCTAGCCAGGGAGGGATTTGTGCATAGAAGTATCGATCGATTCAGCCTTTGGAGAAA 1360 ||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||| Sbjct 1304 AGTGCTAGCCAGGGAGGGAGTTGTGCATAGAAGTATCG---G-TTCGGCCTTTGGAGAAA 1359 Query 1361 AAGTCGAAGATAGCAAAGTAGAGAAGAGATCATGAATAGAGCTAAAATTGGTGGATGATG 1420 | |||||||||||||||||||||||||||||||||| | ||||||| ||||||| || || Sbjct 1360 A-GTCGAAGATAGCAAAGTAGAGAAGAGATCATGAACAAAGCTAAATTTGGTGG-TGGTG 1417 Query 1421 GTGAAAAGGGTTTA-GTAAAGTTGGAACCtttttttGGTAGGGAAGAAAGTA--A-GTTT 1476 ||||||||||||| ||||||||||||||||||||||||||||||||||||| | | || Sbjct 1418 GTGAAAAGGGTTTTTGTAAAGTTGGAACCTTTTTTTGGTAGGGAAGAAAGTAGCAAGGTT 1477 Query 1477 GTGTAATGGTCCGAACTCCAAAGCTATTGTATGTTGTTCTTACACCCAAAGAAAA-AT-- 1533 ||||||||||||||||||||| ||||||||||||| |||||| ||||| |||| | Sbjct 1478 GTGTAATGGTCCGAACTCCAATGCTATTGTATGTT---CTTACATCCAAAAAAAAGAAAA 1534 Query 1534 GCAGAACAGAAGTGATGTACAATGAGAAGCTTCTTTTATTGTTGTAACTCAAGAAATAAT 1593 |||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||| Sbjct 1535 GCAGAAGAGAAGTGATGTACAATGAGAAGCTTATTTTATTGT---AACTCAAGAA-TAAT 1590 Query 1594 TCAGGGTAATTAGTTTATTTTCTTTTGTTGGAA 1626 ||||| ||||||||||||||||||||||| ||| Sbjct 1591 TCAGG-TAATTAGTTTATTTTCTTTTGTTAGAA 1622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80320872000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5