BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474340 Length=640 Score E Sequences producing significant alignments: (Bits) Value AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I sub... 922 0.0 AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr... 532 1e-150 > AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454836-19455668 FORWARD LENGTH=664 Length=664 Score = 922 bits (499), Expect = 0.0 Identities = 583/620 (94%), Gaps = 19/620 (3%) Strand=Plus/Plus Query 1 ACAAATTACATCAATCCACTCACTTACTTTGG---C-AAC--A-AACAACAAAGAGAG-- 51 |||||||||||||||||||||||||||||||| | ||| | |||||||||||||| Sbjct 1 ACAAATTACATCAATCCACTCACTTACTTTGGCAACAAACAAACAACAACAAAGAGAGAA 60 Query 52 A--AACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 109 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTAACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 120 Query 110 CTCGGAGGTAGCTCTCTCGCCGGAGCTAAGCTCTTTATCAAGCCTTCTCGCCAAAGCTTC 169 || |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 121 CTTGGAGGTAGCTCTCTTGCCGGAGCTAAGCTCTTCATCAAACCTTCTCGCCAAAGCTTC 180 Query 170 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTAC 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTATAC 240 Query 230 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 300 Query 290 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 360 Query 350 AAGAGAGGTTTGCTTCTCAAGTTTTTGATTCTTGGAGGAGGTTCTTTGCTTACTTATGTC 409 |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 361 AAGAGAGGTTTGCTTCTCAAATTTTTGATTCTTGGAGGAGGCTCTTTGCTTACATATGTT 420 Query 410 AGCGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 469 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGTGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 480 Query 470 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAA-TCTTTGAAAAAGTCTGGAAAC 528 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||| Sbjct 481 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAAATCTTTCAAAAAGTCAG-AAAC 539 Query 529 TTTCTTCCCAATTCTGTGAACCCTTTTTAGTGATTTATGTATATTGTTGTGTTGTGTTAA 588 ||||| ||||||||| |||||||| |||| || | ||| | || ||| || | ||||||| Sbjct 540 TTTCTCCCCAATTCTATGAACCCTATTTA-TG-TATAT-TGTACTGT-GT-T-GTGTTAA 593 Query 589 TTGCTTTGTAAGCTAGTGAT 608 |||||||||||||||||||| Sbjct 594 TTGCTTTGTAAGCTAGTGAT 613 > AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr3:5468509-5469481 REVERSE LENGTH=665 Length=665 Score = 532 bits (288), Expect = 1e-150 Identities = 388/437 (89%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 55 CATGGCGTCTTTTGCAACCATCGCCGCCGT-ACAACCTTCTGCCGCCGTGAAAGGACTCG 113 |||||||||| |||||||| ||||||| || | |||| || |||||| | |||||||||| Sbjct 66 CATGGCGTCTCTTGCAACCGTCGCCGCTGTGA-AACCATCCGCCGCCATAAAAGGACTCG 124 Query 114 GAGGTAGCTCTCTCGCCGGAGCTAAGCTCTTTATCAAGCCTTCTCGCCAAAGCTTCAAAA 173 | || ||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||| Sbjct 125 GCGGCAGCTCACTCGCCGGAGCTAAGCTCTCCATCAAGCCTTCCCGCCTGAGCTTTAAAC 184 Query 174 CCAAATCCA-CCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTACTTT 232 ||||||||| || | ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 185 CCAAATCCATCC-GGGCTAATGGTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTACTTT 243 Query 233 GATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCTCCT 292 || |||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct 244 GACTTAGAAGATTTGGGTAACACAACAGGTCAATGGGACGTATACGGCTCTGATGCTCCT 303 Query 293 TCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAG 352 |||||||| || || |||||||||||||||||||||||||| ||||| || ||||||||| Sbjct 304 TCTCCTTACAATCCTCTTCAGAGCAAGTTCTTTGAGACATTCGCTGCCCCATTCACAAAG 363 Query 353 AGAGGTTTGCTTCTCAAGTTTTTGATTCTTGGAGGAGGTTCTTTGCTTACTTATGTCAGC 412 ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 364 AGAGGATTGCTCCTCAAGTTCTTGATCCTTGGAGGAGGCTCTTTGCTTACTTATGTCAGC 423 Query 413 GCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAGCTC 472 || | |||||||||||| |||||||| || |||||||||||||| ||||| ||||||||| Sbjct 424 GCTACCTCTACCGGCGAAGTTCTTCCCATCAAGAGAGGTCCTCAGGAGCCGCCTAAGCTC 483 Query 473 GGTCCTCGCGGCAAGCT 489 ||||||||||||||||| Sbjct 484 GGTCCTCGCGGCAAGCT 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30894000405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5