BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474355 Length=439 Score E Sequences producing significant alignments: (Bits) Value AT1G52342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 496 1e-139 > AT1G52342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19492255-19492769 REVERSE LENGTH=515 Length=515 Score = 496 bits (268), Expect = 1e-139 Identities = 381/430 (89%), Gaps = 30/430 (7%) Strand=Plus/Plus Query 1 AAAATCTTAAATAAGAACAATCTTTAAAAAATTTGTGTGGAGTGTGAAACCaaaaaa-aT 59 ||||||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| || Sbjct 9 AAAATCTTAAATAAGAAGAATCTTTTAAATTTTTGTGTTGAGTGTGAAACAAAAAAATAT 68 Query 60 GTGTTACAAAATTCTTCCACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACGAC 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 69 GTGTTACAAAATTCTTCTACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACTCC 128 Query 120 GGTGGCAGAAGTGACGGCCGCGACAGAGGTGGAAGCCACCGCGGGTCACGGTAGCGGTGG 179 ||||||||||||||||| || ||||| |||||||||||||| |||||| |||||||||| Sbjct 129 GGTGGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACCGCTGGTCACCGTAGCGGTGG 188 Query 180 TG--G-TGG------AAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT 230 || | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TGACGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT 248 Query 231 CAAGTGTAGGTATCATCAACATGAATATCAATGGCTTCCTTCATCTTCATCTTC------ 284 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 249 CAAGTGTAGGTATCATCAACATGAATATCAATGGCTTCCTTCTTCTTCTTCTTCTTCTTC 308 Query 285 ------ATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATAG 338 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TTCTTCATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATA- 367 Query 339 TTTTATGTTTTTATTATTCATGGTTATTTTGATTTGCTAAGTATTTCAATCAAAGTAGAA 398 |||| | |||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 368 TTTT-T------ATTATTCATGGTTATTTTGATTCGTTAAGTATTTCAATCAAAGTAGAA 420 Query 399 ATTGTGTTGT 408 |||||||||| Sbjct 421 ATTGTGTTGT 430 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20861115835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5