BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474355

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   496    1e-139


> AT1G52342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19492255-19492769 
REVERSE LENGTH=515
Length=515

 Score =  496 bits (268),  Expect = 1e-139
 Identities = 381/430 (89%), Gaps = 30/430 (7%)
 Strand=Plus/Plus

Query  1    AAAATCTTAAATAAGAACAATCTTTAAAAAATTTGTGTGGAGTGTGAAACCaaaaaa-aT  59
            ||||||||||||||||| ||||||| |||  ||||||| ||||||||||| |||||| ||
Sbjct  9    AAAATCTTAAATAAGAAGAATCTTTTAAATTTTTGTGTTGAGTGTGAAACAAAAAAATAT  68

Query  60   GTGTTACAAAATTCTTCCACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACGAC  119
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |
Sbjct  69   GTGTTACAAAATTCTTCTACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACTCC  128

Query  120  GGTGGCAGAAGTGACGGCCGCGACAGAGGTGGAAGCCACCGCGGGTCACGGTAGCGGTGG  179
            |||||||||||||||||  || ||||| |||||||||||||| |||||| ||||||||||
Sbjct  129  GGTGGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACCGCTGGTCACCGTAGCGGTGG  188

Query  180  TG--G-TGG------AAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT  230
            ||  | |||      |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  189  TGACGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT  248

Query  231  CAAGTGTAGGTATCATCAACATGAATATCAATGGCTTCCTTCATCTTCATCTTC------  284
            |||||||||||||||||||||||||||||||||||||||||| ||||| |||||      
Sbjct  249  CAAGTGTAGGTATCATCAACATGAATATCAATGGCTTCCTTCTTCTTCTTCTTCTTCTTC  308

Query  285  ------ATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATAG  338
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  309  TTCTTCATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATA-  367

Query  339  TTTTATGTTTTTATTATTCATGGTTATTTTGATTTGCTAAGTATTTCAATCAAAGTAGAA  398
            |||| |      |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct  368  TTTT-T------ATTATTCATGGTTATTTTGATTCGTTAAGTATTTCAATCAAAGTAGAA  420

Query  399  ATTGTGTTGT  408
            ||||||||||
Sbjct  421  ATTGTGTTGT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5