BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474395 Length=752 Score E Sequences producing significant alignments: (Bits) Value AT1G52690.1 | Symbols: | Late embryogenesis abundant protein (... 1009 0.0 > AT1G52690.1 | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr1:19619745-19620844 FORWARD LENGTH=862 Length=862 Score = 1009 bits (546), Expect = 0.0 Identities = 642/688 (93%), Gaps = 8/688 (1%) Strand=Plus/Plus Query 46 CGAGTTTTTTCGAAGAGAGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 105 ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 76 CGAATTTCTTCGAAGAGTGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 135 Query 106 AACTAGAGGCAAGGTTCAGGAGAAAACAGGGGAAGCTATGGGAACCATGGGGGAGAAAAC 165 ||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 136 AACCAGAGGCAAGGCTCAGGAGAAAACTGGGGAAGCTATGGGAACGATGGGGGACAAAAC 195 Query 166 ACAAGCAGCTAAGGAAAAAACTCAAGAGACAGCCCAATCAGCCGAACAAAAGGCTCATGA 225 ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| Sbjct 196 ACAAGCAGCTAAGGACAAAACTCAAGAGACAGCCCAGTCAGCCCAACAAAAGGCTCATGA 255 Query 226 AACAGCTCAGTCAGCTAAAGACAAGACATCTCAAGCTGCACAGACGACTCAACAGAGAGC 285 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| Sbjct 256 AACAGCTCAGTCAGCTAAAGACAAGACGTCTCAAGCTGCACAAACGACTCAAGAGAGAGC 315 Query 286 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 375 Query 346 CAAGTCACAAGATGCAGCAGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 405 |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 376 CAAGGCACACGATGCAGCTGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 435 Query 406 GAGTGGGATCTTGGGCCAGACCGGTGAGCATGTAAAACAGATGGCTATGGGAGCTACTGA 465 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 436 CAGTGGGATCTTGGGCCAGACCGGTGAGCAGGTGAAACAGATGGCTATGGGAGCTACTGA 495 Query 466 TGCAGTGAAGCACACTTTAGGGCTTGGCGCTGATGAAGGAAACAAAGAACAAGTTTCTTC 525 ||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 496 TGCGGTGAAGCACACTTTAGGGCTTCGCACTGATGAAGGAAACAAAGAACATGTTTCTTC 555 Query 526 AGCTCCAAGTACTACTAC---GACCACTACTCGTGAGACACAGAGGAAGTGAAGAAGAGG 582 |||||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 556 AGCTCCAAGTACTACTACTACGACCACTACTCGTGAGACACAGAGGAAGTGAAGA-G-G- 612 Query 583 ATAAATAtttgttttgtgttcttggttttcatgtttgtttgctttggttagtgtttgttg 642 |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 613 ATAAATATTTGTTTCGTGTTCGTGGTTTTCATGTTTGTTTGCTTTGATTAGTGTTTGTTG 672 Query 643 tgttCGTGAGATTATGTTTATCCTTCTTGTTGTTTATTGGGTTTGAATGTACTTTTACGT 702 ||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||| Sbjct 673 CGTTCGTGAGGTTATGCCGATCCTTGTTGTTGTTTATTGGGTTTGAATGTACTTCTACGT 732 Query 703 ATTATAATATGCGATGGTTTTCTTCTAT 730 ||||| || | ||||||||||| ||| Sbjct 733 ATTATCATGTA--ATGGTTTTCTTTTAT 758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36520224869 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5