BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474398
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52730.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1967 0.0
AT3G15610.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1149 0.0
> AT1G52730.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:19642490-19645134 FORWARD LENGTH=1379
Length=1379
Score = 1967 bits (1065), Expect = 0.0
Identities = 1173/1224 (96%), Gaps = 11/1224 (1%)
Strand=Plus/Plus
Query 1 CTTCCTGTGTCGATGTAGAAATCCCTAAAACTTGCTACTG-TTTGCAATAC----TTTGT 55
||||| || | ||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1 CTTCCCGTCTAGATGTAGAAATCCCTAAAACTTGCTACTGTTTTGC-ATACGGGGCTTGT 59
Query 56 ACAAATAAAAACCACCCAATTCCTTCGCTTTCCTCTACAAATT-TCCAC---ttttttt- 110
|||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||
Sbjct 60 ACAAATAAAAACCACCCAATTCCTACGCTTTCCTCTACAAATTGTCCCCTTTTTTTTTTA 119
Query 111 ACTTTTCTACTTTCAATTCATCTTTGGTTCTGTAGAATTCTCAGGAATCAGCATTCCACT 170
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 ACTTTTATACTTTCAATTCATCTTTGGTTCTGTAGAATTCCCAGGAATCAGCATTCCACT 179
Query 171 GGTTTAGGATAAATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGACATTCA 230
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 GGTTTAGGATAGATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGCCATTCA 239
Query 231 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACGCCTGATGGTTTCTTCCTCATCAGC 290
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 240 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGC 299
Query 291 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGAGAAACTGGAGACTGGATTGGTACA 350
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACA 359
Query 351 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 419
Query 411 GCATCTGCTTCAGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 470
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCATCTGCTTCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 479
Query 471 CATTCTTTTGAGCACAAGCATATTGTGCGAGCATGCGCCTTCTCAGAGGATACAAAATTG 530
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 480 CATTCTTTTGAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCG 539
Query 531 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGCGTTTTTGACATGAATCGGTTGGATGCA 590
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCA 599
Query 591 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 659
Query 651 GATCAAACAATATTAAGTTCCTGCACTGATATTGGTGGTGTAAGGTTATGGGATGTGAGG 710
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 660 GATCAAACAATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGG 719
Query 711 AGTGGGAAAATTGTCCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 770
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTGGGAAAATTGTGCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 779
Query 771 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCAAAC 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAAC 839
Query 831 CACTTTGGACTAGTTAAGAGTTACGACATGCCCTGCAATATTGAATCTGCGTCCTTGGAG 890
|| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 840 CATTTTGGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCGTTGGAG 899
Query 891 CCAAAGTCTGGTGAGAAGTTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTATTTGAT 950
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 CCAAAGTCTGGTGAAAAATTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGAT 959
Query 951 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTG 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTT 1019
Query 1011 AGGTTTACCCCCACTGGCCTGTCTTATGCCTCGGGATCTGAAGACGGGACCATCAGAATC 1070
|||||||| |||||||| | || |||||||||||||||||||||||||| |||||||||
Sbjct 1020 AGGTTTACTCCCACTGGTTTATCCTATGCCTCGGGATCTGAAGACGGGACAATCAGAATC 1079
Query 1071 TGGCAAACAACACCAGCAAATCCCGAAGAAAACGAAGCAAGCTCAAGGAGAGTGAAGCAT 1130
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 1080 TGGCAAACAACACCAGCAAATCCCGAAGAGAACGAAACTAGCTCGAGGAGAGTGAAGCAT 1139
Query 1131 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1199
Query 1191 GCAGAGAAACCATCTGATACTTaa 1214
||||||||||||||||||||||||
Sbjct 1200 GCAGAGAAACCATCTGATACTTAA 1223
> AT3G15610.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5290847-5293090 REVERSE LENGTH=1549
Length=1549
Score = 1149 bits (622), Expect = 0.0
Identities = 905/1041 (87%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 183 ATGGAGAAGAAGAAGGT-GACGATTCCACAAGTGTGTCATGGACATTCAAGACCTGTTGT 241
|||||||||||||| || | ||| ||| | |||||| ||||| ||||| |||||||||||
Sbjct 295 ATGGAGAAGAAGAAAGTCG-CGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTTGT 353
Query 242 TGATTTGTTCTACAGTCCAATTACGCCTGATGGTTTCTTCCTCATCAGCGCTAGCAAAGA 301
|||||||||||||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct 354 GGATTTGTTCTACAGTCCAATCACTCCTGATGGTTTCTTCCTCATCAGCGCAAGTAAAGA 413
Query 302 TTCGCATCCAATGTTGAGAAATGGAGAAACTGGAGACTGGATTGGTACATTTGAAGGGCA 361
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 414 TTCTCAACCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGTCA 473
Query 362 TAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCTGCATCTGCTTC 421
||||||||| || |||||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 474 TAAAGGTGCTGTGTGGAGTTCTTGTCTTGATAACAATGCTTTACGTGCAGCTTCTGCATC 533
Query 422 AGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGC-TGCATTCTTTTG 480
|| ||||||||||| || ||||||||||| || || |||||||| | ||||||||||||
Sbjct 534 TGCTGATTTTTCAGCGAAGCTTTGGGATGCTTTGACTGGGGATGT-CTTGCATTCTTTTG 592
Query 481 AGCACAAGCATATTGTGCGAGCATGCGCCTTCTCAGAGGATACAAAATTGT-TGCTCACA 539
|||||||||||||||| ||||||||||||||||| ||||||| ||| | | | |||||
Sbjct 593 AGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAA-TATCTAATCACA 651
Query 540 GGAGGGTTTGAGAAAATTCTTCGCGTTTTTGACATGAATCGGTTGGATGCACCTCCTACA 599
||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||
Sbjct 652 GGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTACA 711
Query 600 GAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGTGATCAAACA 659
||| |||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 712 GAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACATGGCTTCACGGTGATCAAACA 771
Query 660 ATATTAAGTTCCTGCACTGATATTGGTGGTGTAAGGTTATGGGATGTGAGGAGTGGGAAA 719
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 772 ATATTAAGTTCTTGCACTGATATTGGTGGTGTGAGGTTATGGGATGTGAGGAGTGGCAAA 831
Query 720 ATTGTCCAAACGT-TAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGG 778
|| || ||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 832 ATAGTGCAAAC-TCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATGG 890
Query 779 ACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCAAACCACTTTGG 838
|||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |||||
Sbjct 891 ACGGTATATAACAACTGCCGATGGGTCAACTGTTAAATTTTGGGATGCAAATCATTTTGG 950
Query 839 ACTAGTTAAGAGTTACGACATGCCCTGCAATATTGAATCTGCGTC-CTTGGAGCCAAAGT 897
|||||| || ||||||||||||||||||||||| |||||||| || ||| |||||||| |
Sbjct 951 ACTAGTGAAAAGTTACGACATGCCCTGCAATATCGAATCTGCATCGCTT-GAGCCAAAAT 1009
Query 898 CTGGTGAGAAGTTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTATTTGATTTCTACA 957
|||| | || || |||||||||||||| ||||||||||| ||| | ||||||||| |||
Sbjct 1010 CTGGCAACAAATTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCACA 1069
Query 958 CTGGCGAA-GAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTGAGGTTT 1016
| || || |||||||||||||||||||||||||| ||||| || ||||| ||||| |||
Sbjct 1070 CCGG-AAAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATTT 1128
Query 1017 ACCCCCACTGGCCTGTCTTATGCCTC-GGGATCTGAAGACGGGACCATCAGAATCTGGCA 1075
| || || || ||||||||| || ||| |||||||| || || |||||||| |||||
Sbjct 1129 GCACCAACAGGTGAGTCTTATGCTTCAGGG-TCTGAAGATGGTACAATCAGAATTTGGCA 1187
Query 1076 AACAACACCAGCAAATCCCGAAGAAAACGAAGCAAGCTCAAGGAGAGTGAAGCATAGCGT 1135
||| ||| | ||||| ||||| | | ||| || |||| || |||||| || ||
Sbjct 1188 AACTGGACCGGTGAATCCTGAAGAGATC--AGCGAG-TCAA--AG-CCGAAGCAGAGTGT 1241
Query 1136 GGATGAAGTTTCAAAG-AAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACCGCAG 1194
|||||| ||| | | |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1242 GGATGAGGTTGC-TCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGAAAAACCGCAG 1300
Query 1195 AGAAACCATCTGATACTTaaa 1215
|||||||||||||| ||||||
Sbjct 1301 AGAAACCATCTGATGCTTAAA 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5