BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474411
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52870.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1908 0.0
> AT1G52870.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr1:19685745-19687907 FORWARD LENGTH=1441
Length=1441
Score = 1908 bits (1033), Expect = 0.0
Identities = 1292/1412 (92%), Gaps = 37/1412 (3%)
Strand=Plus/Plus
Query 1 ATAAGATAAAGTCCGTTTCAAATccccccccccccAACTCGGAGAAACCGAAGCAAGTCT 60
||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 16 ATAAGATAACGTCCGTTTCAAAT------TCCCCCAACTCGGAGAAACCGAAGCGAGTCT 69
Query 61 GACTCACTGA---GTCATCACCGAGTCAACTCTTCGTCTCCGCCATGGCTGCTGCTTCAC 117
||||| |||| |||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 70 GACTCTCTGAGTCGTCACCACCGAGTCAACTC-T-GTCTCCGCCATGGCTGCTGCTTCAC 127
Query 118 TCCACACCTCAATCTCTCCACGTAGCTTCCTTCCTCTCTCTAAACCGTCTCTGAAACCTC 177
||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 128 TCCACACTTCAATCTCACCACGTAGCTTCCTTCCTCTCTCCAAACCATCTCTAAAACCTC 187
Query 178 ACCGTTCCCAAATTTTCCTGAGAAACAAACAGAGG-A--------CGTGCGCGTTGATCC 228
|||||||||||||| | |||||||||||||||||| | ||||||| |||||||
Sbjct 188 ACCGTTCCCAAATTCTACTGAGAAACAAACAGAGGAATTGCGTTTCGTGCGCATTGATCC 247
Query 229 GTGACGAAATCGACGTGATTCCGGTTCAGAGCCGAGATCGTACGGACCATGAGGAAGGTT 288
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 248 GTGACGAAATCGACCTGATTCCGGTTCAGAGCCGAGATCGGACCGACCATGAGGAAGGTT 307
Query 289 CGGTCGTGGTTATGAGTGCTGAGACGGAGATAGATGTTAACGAACCGGTGGTTGTAGGGT 348
|||| || || ||||| ||||||||| | | |||| ||| ||| |||| |||||||| |
Sbjct 308 CGGTGGTAGTGATGAGCACTGAGACGGCGGTTGATGGTAATGAATCGGTTGTTGTAGGTT 367
Query 349 TTAGTGCTGCAACGAGCGAAGGTCAGCTTTCGTTGGAAGGG------T-TTC--CTTCTT 399
|||||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||
Sbjct 368 TTAGTGCTGCGACGAGTGAAGGTCAGCTTTCGTTAGAAGGGTTTCCTTCTTCTTCTTCTT 427
Query 400 CGGGAGGTGATTTGGgagatgagaagagaagagagaacgaagaaatggagaagatgattg 459
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 428 CGGGAGCTGATTTAGGAGATGAAAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATCG 487
Query 460 atagaaCCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCCATTACCAAATTGC 519
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 488 ATCGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCTATTACCAAATTGC 547
Query 520 TCACCATTGATCATGATTATTGGCATGTATGGACACTGTTTGAAATTCTAAGATATGCTC 579
| ||||| ||||||||||||||||||| |||||| |||||||| || |||||||||||||
Sbjct 548 TTACCATCGATCATGATTATTGGCATGGATGGACTCTGTTTGAGATACTAAGATATGCTC 607
Query 580 CTCAACATAACTGGATTGCTTACGAAGAAGCGTTAAAGCAAAACCCGGTTCTGGCGAAAA 639
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 608 CTCAACATAACTGGATTGCTTACGAAGAAGCGCTAAAGCAAAACCCGGTTCTAGCAAAAA 667
Query 640 TGGTCATAAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 699
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TGGTCATTAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 727
Query 700 AACCCTTGTTTGAAATTGATCGAGCAAGAACATTGAGATCAGGACTAGTGGGTTTTACTC 759
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 728 AACCGTTGTTTGAAATTGATAGAGCAAGAACATTGAGATCAGGACTAGTAGGTTTCACTC 787
Query 760 TCCATGGCTCGTTGTCTCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCTTTTCAAG 819
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 788 TCCATGGCTCGTTATCGCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCGTTTCAAG 847
Query 820 ATTGGTGGGTGGTTCCTGTGAAAGTTGTCTTTGATCAAACAGTATGGTCGGCTATATGGA 879
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 848 ATTGGTGGGTGGTTCCTGTGAAAGTTGCCTTTGATCAAACAGTCTGGTCAGCTATATGGA 907
Query 880 ATAGTATTTACTTCACGGTTCTTGGGTTT-CTGCGTCTT-GAATCTCCTCTCAGTATCTT 937
| ||||||||||||||||||||| ||||| |||||| || ||||| ||| |||| |||||
Sbjct 908 ACAGTATTTACTTCACGGTTCTT-GGTTTCCTGCGT-TTCGAATCGCCTATCAGCATCTT 965
Query 938 CAAAGAACTAAAAGCTACCTTCTTGCCTATGCTAACCGCAGGTTGGAAACTTTGGCCATT 997
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 966 CAAAGAACTAAAAGCTACGTTCTTGCCTATGCTAACAGCAGGTTGGAAGCTTTGGCCATT 1025
Query 998 TGCTCATTTGATCACATACGGTTTGGTCCCTGTAGAACAACGACTTCTCTGGGTAGATTG 1057
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1026 TGCTCATTTGATCACATACGGTTTGGTCCCAGTAGAACAACGACTTCTCTGGGTAGATTG 1085
Query 1058 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAATGAGAAATCAGAAGCTAG 1117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1086 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAACGAGAAATCAGAAGCTAG 1145
Query 1118 AATCTCGGAATCTGTCATTGAAACCTCTTCGAGTTCTACAACATCCATTGATCCCTCCAA 1177
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||
Sbjct 1146 AATCTCGGAATCTGTCATTGAGACCTCTTCGAGTTCTACTACAACCATTGATCCCTCTAA 1205
Query 1178 GGAATGAGAAAGCAGAAAAGGCAAATCAGGTCTAATCAGCTTCATATTGTATATATACAC 1237
|||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct 1206 GGAATGAGAAAGCAGAAAAGCCAAATCGGGTCTTATCAGCATCATATTGTATATATACA- 1264
Query 1238 AGAGTTTAGCCAACAGAGTGGCTGGAGATTTGAGATTGATACAGAGGAGATGAAGATATT 1297
|||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1265 -GAGTTTAGCCAATAAAGTGGCCAGAGATTTGAGATTGATACAGAGGAGATGGAGATATT 1323
Query 1298 CAAATGGATGTATCTCTTAATGTGTAAGAATAATAACCAGAATCTTGAATACACAAGAGA 1357
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1324 CAAATGGATGTATCTATTAATGTGTAAGAAAAATAACCAGAATCTTGAATACACAATAGA 1383
Query 1358 AAACA-TTTTATTTGATCACAGTGCTCTAATA 1388
|| || ||||||||||||||||||||||||||
Sbjct 1384 AA-CAATTTTATTTGATCACAGTGCTCTAATA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5