BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474412
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52880.1 | Symbols: NAM, ANAC018, ATNAM, NARS2 | NAC (No Api... 1672 0.0
> AT1G52880.1 | Symbols: NAM, ANAC018, ATNAM, NARS2 | NAC (No Apical
Meristem) domain transcriptional regulator superfamily
protein | chr1:19688957-19690542 REVERSE LENGTH=1403
Length=1403
Score = 1672 bits (905), Expect = 0.0
Identities = 1156/1269 (91%), Gaps = 50/1269 (4%)
Strand=Plus/Plus
Query 1 CCATTTTGATTTGTCGTTTTATTGCGTTTCCA-TTTAAAAAAGAAAGATTACTAACGCCG 59
||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||
Sbjct 2 CCATTTTGATTTGTCGTTTTAATGC-CTTCCATTTTTAAAAAGAAAGATTACTAACGCCG 60
Query 60 ACTCTCTCAAACTCTCTCAA-CCA-AAAAA-TG------GA-------------G-AG-- 94
||||||| |||||||||||| ||| ||||| | || | ||
Sbjct 61 ACTCTCTAAAACTCTCTCAAACCATAAAAAATATTCTCCGATCATCATTTTAATGGAGAG 120
Query 95 TACAGATTCCTCCGGTGATCCTCCGCCGCCGCAACCAAACCTCCCTCCAGGGTTCAGGTT 154
||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 121 TACAGATTCTTCCGGTGGTCCTCCGCCGCCGCAACCAAACCTCCCTCCAGGATTCCGGTT 180
Query 155 TCATCCAACAGACGAAGAACTCGTAATTCATTACCTCAAACGCAAAGCTGATTCTGTTCC 214
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCATCCAACAGACGAAGAACTTGTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCC 240
Query 215 TTTACCAGTAGCAATCATCGCCGACGTTGATCTTTACAAATTCGATCCATGGGAACTTCC 274
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCC 300
Query 275 CGCGAAAGCTTCGTTTGGAAAACAAGAATGGTATTTTTTCAGTCCTCGTGATCGGAAATA 334
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 301 CGCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATCGGAAATA 360
Query 335 TCCAAACGGAGCAAGACCTAACCGAGCTGCGACTTCCGGTTATTGGAAAGCGACTGGTAC 394
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCCAACGGAGCTAGACCTAACCGAGCTGCGACTTCCGGTTATTGGAAAGCGACTGGTAC 420
Query 395 AGATAAACCGGTGATTTCAACCGGTGGCGGTGGTAATAAAAAAGTGGGAGTTAAAAAAGC 454
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||
Sbjct 421 AGATAAACCGGTGATTTCAACCGGCGGTGGTGGTAGTAAAAAAGTGGGAGTTAAAAAGGC 480
Query 455 TCTAGTGTTTTACAGTGGTAAACCACCAAAAGGAGTTAAATCAGATTGGATTATGCATGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTAGTGTTTTACAGTGGTAAACCACCAAAAGGAGTTAAATCAGATTGGATTATGCATGA 540
Query 515 ATATCGATTAACTGATAATAAACCTACTCATATTTGTGACTTCGGCAACAAGAAAAACTC 574
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATATCGGTTAACTGATAATAAACCTACTCATATTTGTGACTTCGGCAACAAGAAAAACTC 600
Query 575 TCTCAGGCTTGATGATTGGGTGTTGTGTCGAATCTACCAGAAAAACAATAGTACAAcatc 634
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 601 TCTCAGGCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATAGTACAGCATC 660
Query 635 tcgacatcatcatcatcatcatc-t-t-catctggataataatgatcatcatcgtcatga 691
| ||||||||||||||| ||||| | | ||||| |||||| |||||||||||||||||
Sbjct 661 TAGACATCATCATCATCTTCATCATATTCATCTAGATAAT---GATCATCATCGTCATGA 717
Query 692 tatgatgattgatgatgaGCGATTTCGTCATGTTCCTCATGGTCTTCACTTCCCGGCGAT 751
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 718 TATGATGATTGATGATGATCGATTCCGTCATGTTCCTCCTGGTCTTCACTTCCCGGCGAT 777
Query 752 TTTTTCAGATAATAATGATCCGACGGCTATATATGATGGTGGTGGCGGCGGATACGGCGG 811
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 778 TTTTTCTGACAATAATGATCCGACGGCTATATATGATGGTGGCGGCGGCGGATACGGAGG 837
Query 812 CGGAAATTACTCGATGAATCATAACTTCGCATCTGGATCGAAGCAGGAGCAGTTATTTCC 871
|||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 838 TGGAAGTTACTCGATGAATCATTGTTTCGCATCTGGATCAAAGCAGGAGCAGTTGTTTCC 897
Query 872 ACCGGTGATGATGATGACGAATATAAATCAAGATTCTGGTATTGGATCGTCTTCGTCACC 931
|||||||||||||||||| | | ||||||||||||| |||||||||||||| ||||||||
Sbjct 898 ACCGGTGATGATGATGACTAGTCTAAATCAAGATTCCGGTATTGGATCGTCGTCGTCACC 957
Query 932 TAACAAGAGATTTAACGGCGGCGGCGTTGGAGATTGTTCGACTTC-ATTGGCGGCGACGC 990
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 958 TAGCAAGAGATTTAACGGCGGCGGCGTTGGAGATTGTTCGACTTCTAT-GGCGGCGACGC 1016
Query 991 CGTTAATGCAGAACCAAGGTGGGATTTACCAGTTGCCTGGTCTGAATTGGTACTCTTGAA 1050
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 1017 CGTTAATGCAGAACCAAGGTGGGATTTACCAATTGCCTGGTTTGAATTGGTATTCTTGAA 1076
Query 1051 ATAAAATTT-CGATTTTATA-TTTTTAAAATTTGTGTGTATATATACGGTTTGAGTAATT 1108
| | ||||| |||| | | |||||||||||||||| |||||||||||||||||| |||
Sbjct 1077 A-ACAATTTACGATGA-AGAATTTTTAAAATTTGTGTATATATATACGGTTTGAGTGATT 1134
Query 1109 AGGGGGCATTGGGGGATTTAATTACGGTTGATTATTATTGTATAGTGTTATAGAACGAAT 1168
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 1135 AGGGGGCATTGGGGGATTTATTTACGGTTGATTATTATTGTA--GTGTTATAGAAC---T 1189
Query 1169 TAAGGAGATTAATTTAAATAGATTAATGGAGGAGAGGTG-A-GGTAACATATAGAAATTA 1226
||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 1190 -AAGGAGATTAAATTAAATAGATT---GGAGGAGAGGTATAAGGTAACATATAGAAATTA 1245
Query 1227 TACAACAAT 1235
|||||||||
Sbjct 1246 TACAACAAT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5