BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474427
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53080.1 | Symbols: | Legume lectin family protein | chr1:1... 1225 0.0
AT5G03350.1 | Symbols: | Legume lectin family protein | chr5:8... 259 3e-68
AT3G15356.1 | Symbols: | Legume lectin family protein | chr3:5... 91.6 1e-17
> AT1G53080.1 | Symbols: | Legume lectin family protein | chr1:19781368-19782219
FORWARD LENGTH=852
Length=852
Score = 1225 bits (663), Expect = 0.0
Identities = 783/841 (93%), Gaps = 8/841 (1%)
Strand=Plus/Plus
Query 1 ATGCAGATCCAAAAACTCTGtttttttGCTCTGTTCATATCTTTGTTCAGCACTAAAACC 60
||||||||||| ||||||||| |||||| |||||||||||||||||| ||| ||||||||
Sbjct 1 ATGCAGATCCACAAACTCTGTATTTTTGTTCTGTTCATATCTTTGTTAAGCTCTAAAACC 60
Query 61 ATTTCCGCCGTCAAATTCAACTTCAACCATTTCGACGGTACAGATCTAATCTTCCTCGGG 120
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||
Sbjct 61 ATTTCCGCCGTCAAATTCAACTTCAACCGTTTCGACGGAACAAATCTAATCTTCATCGGG 120
Query 121 TACGCGGAGCTGGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGCCGAGCTAGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180
Query 181 CGTGGCAAAAATCCTTTCTCACATGGTCGAGGTCTCTACACAGATCTAATCCCATTCAAA 240
|||| ||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 181 CGTGACAACATTCCATTCTCACATGGTCAAGGTCTCTACACAGATCCAATCCCATTCAAA 240
Query 241 TCTTCCAACAACATTTCTTCTTCTGTTTACTCTTTTAAAACATCTTTCACTTTCTCTATC 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 TCTTCCAACAACACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACTTTCTCCATC 300
Query 301 ACTCCTCGCCGGTCAAACCCTAACCCTGGTCATGGTCTCGCCTTCATCGTGGTCCCAACC 360
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 ACTCCTCGACGGTCAAACCCTAACCCTGGTCATGGTATCGCCTTCATCGTGGTCCCAACC 360
Query 361 --A---TAC-ACTACGACCAAGACTCAACCCGTGGCTTCCTTGGTCTAGTTAACCGCACA 414
| ||| | |||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 361 GTAGCCTACGAGTACGACCAAGACTCAACCCGCGGCTTCCTCGGTCTAGTTAACCTCACA 420
Query 415 ACCAATGGCAATCCTAATAACCATCTTTTTGCGGTTGAATTCGATGTTTTCCAAGACAAA 474
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 421 ACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGATGTTTTCCAAGACAAA 480
Query 475 CGTTTTGGTGATATTAATGATAATCATGTTGGTATCAATATTAACTCTGTTACCTCAAAA 534
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 481 CGTTTTGGTGATATTAATGATAATCATGTTGGTGTTAATATTAACTCTGTTAACTCAAAG 540
Query 535 GTTTCTGAGAAAGCTGGTTATTGGGTTCAGACAAGAACTGGAGGAAACAATCAATGGTTG 594
||||||||||||||||| |||||| |||||||||||||| |||| || ||||||||||||
Sbjct 541 GTTTCTGAGAAAGCTGGGTATTGGATTCAGACAAGAACTAGAGGGAAGAATCAATGGTTG 600
Query 595 TTTAAGGAAGTGAAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCGAGTACAAGAAC 654
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 601 TTTAAGGAAGTGAAGCTTAGTAGCGGAGACAACTACAAAGCTTGGATTGAGTATAAGAAC 660
Query 655 AGTAAAGTCATTGTTTGGCTCGCACCTGCCCATTTAAAGAAACCGAAGAGGCCATTGATC 714
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAAGAAACCGAAGAGGCCATTGATC 720
Query 715 GAAACACAAGTTGATCTCTCTGAGGTGGTTCTTGAAACAATGTATACTGG-TTTTGCTGG 773
|||||||||||||||||||| |||||||||||||| || |||||||| || |||| | ||
Sbjct 721 GAAACACAAGTTGATCTCTCGGAGGTGGTTCTTGAGACTATGTATACCGGCTTTTCC-GG 779
Query 774 TTCGATGGGTCGTGGCATCGAGCGTCACGACATTTGGAGCTGGAGTTTCGAGAACACCGC 833
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 TTCGATGGGTCGTGGCGTCGAGCGTCACGACATTTGGAGCTGGAGTTTTGAGAACACCGC 839
Query 834 C 834
|
Sbjct 840 C 840
> AT5G03350.1 | Symbols: | Legume lectin family protein | chr5:815674-816658
REVERSE LENGTH=985
Length=985
Score = 259 bits (140), Expect = 3e-68
Identities = 583/792 (74%), Gaps = 49/792 (6%)
Strand=Plus/Plus
Query 58 ACCATTTCCGCCGTCAAATTCAACTTCAACCATTTCGACGGTACAGA-TCTAATCTTCCT 116
|||| |||||||||||| ||||| |||||| | || | |||| | | |||||||
Sbjct 76 ACCACTTCCGCCGTCAACCTCAACCTCAACC-TCAAAAC-CT-CAGAGT-TGGTCTTCCT 131
Query 117 CGG-GTACGCGGAGCTGGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCA 175
|| | |||| ||||| || || || | |||||| | ||||| ||||||||||||||||
Sbjct 132 TGGAG-ACGCTGAGCTCGGTCCTGCTTCTGATGGCGTCAGCCGCTCCGGAGCTCTCTCCA 190
Query 176 TGACCCGTGGCAAAAATCCTTTCTCACATGGTCGAGGTCTCT--ACACAGATCTAATCCC 233
|||| || | | | || || ||||| || || | | |||| | | || || | ||||
Sbjct 191 TGACACGAGACGAGAACCCATTCTCTCACGGCCAAAGTCTTTGGTC-CA-CTCCAGTCCC 248
Query 234 ATTCAAATCTTCCAACAACATTTCTTCTTCTGTTTACT-CTTTTAAAACATCTTTCACTT 292
||||| ||| | ||| | ||||||||| ||| | | ||| |||| ||||||||||
Sbjct 249 TTTCAAGCCTT-CTTCAA-A-CTCTTCTTCTCCTTA-TCCATTTGAAACTTCTTTCACTT 304
Query 293 TCTCTATCACTCCTCGCCGGTCAAACCCTAACCCTGGTCATGGTCTCGCCTTCATCGTGG 352
|||| ||| || |||| | |||||||| ||||||||| || || || || | || |
Sbjct 305 TCTCCATCTCTACTCG-C-ATCAAACCC-GCCCCTGGTCACGGCCTTGCTTTTGTTGTCG 361
Query 353 TCCCAACCA-T-ACACTACGACCAAG-ACTCAACCCG-TGGCTTCCTTGGTCTAGTT-AA 407
|||| ||| | | | | || | | || ||||| ||| | ||| || || || ||
Sbjct 362 TCCCTTCCATTGAAAGT--GA-C-GGTCCTGGACCCGCTGGATACCTCGGGATA-TTCAA 416
Query 408 CCGCA-CAACCAATGGCAATCCTAATAACCATC-TTTTTGCGGTTGAATTCGATGTTTTC 465
| | ||| ||||||||| || || ||||| | | ||||| || |||||||| |||||
Sbjct 417 CAAAACCAA-CAATGGCAACCCCAAAAACCA-CATCTTTGCTGTCGAATTCGACGTTTTT 474
Query 466 CAAGACAAACGTTTTGGTGATATTAATGATAATCATGTTGGTATCAATATTAACTCTGTT 525
|| |||||| ||||||| || ||||||||||| ||||| || || ||||| |||||||||
Sbjct 475 CAGGACAAAGGTTTTGGAGACATTAATGATAACCATGTCGGGATTAATATCAACTCTGTT 534
Query 526 ACCTCAAAAGTTTCTGAGAAAGCTGGTTATTGGGTTCAGACAAGAACTGGAGGAAAC-AA 584
|| || ||| ||||||||||||||||||||||||||||| ||| ||| | ||| ||
Sbjct 535 ACTTCCGTTGTTGCTGAGAAAGCTGGTTATTGGGTTCAGACAGGAATTGG-GAAAATGAA 593
Query 585 TCAATGGTTGTTTAAGGAAGTG-AAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCG 643
|| |||| |||||| || || ||||| |||| ||||| | ||||| |||||||| |
Sbjct 594 ACACTGGTCGTTTAAAGA-GTTCAAGCTGAGTAATGGAGAGAGGTACAAGGCTTGGATTG 652
Query 644 AGTACAAGAACAGTA-AAG-TCATTGTTTGGCTCGCACCTGC--CCATTTAAAGAAACCG 699
|||| | ||| | | ||| | | ||| ||||| || | || || || ||||||
Sbjct 653 AGTATA-GAA-ACTCCAAGGTTACAGTTACTCTCGCGCCAGAAACCGTT-AA-GAAACCT 708
Query 700 AAGAGGCCATTGATCGAAACACAAGTT-GATCTCTCTGAGGTGGTTCTTGAAACA-ATGT 757
|||| ||| ||||||| | || || ||||||||| |||| ||||| ||| | ||||
Sbjct 709 AAGAAGCCTTTGATCGTTGCCCAT-TTAGATCTCTCTAAGGTTTTTCTTCAAA-ATATGT 766
Query 758 ATACTGGTTTTGCTGGTTCGATGGGTCGTGGCATCGAGCGTCACGACATTTGGAGCTGGA 817
| | |||||| ||||| | ||||| |||||| | || ||||| ||||||||||| ||||
Sbjct 767 ACCCCGGTTTTTCTGGTGCCATGGGCCGTGGCGTTGAACGTCATGACATTTGGAGTTGGA 826
Query 818 GTTTCGAGAACA 829
||| ||||||
Sbjct 827 CCTTCCAGAACA 838
> AT3G15356.1 | Symbols: | Legume lectin family protein | chr3:5174402-5175469
REVERSE LENGTH=1068
Length=1068
Score = 91.6 bits (49), Expect = 1e-17
Identities = 257/353 (73%), Gaps = 32/353 (9%)
Strand=Plus/Plus
Query 483 TGATATTAATGATAATCATGTTGGTATCAATATTAACTCTG-TTACCTCAAAAGTTTCTG 541
||| |||| || ||| ||||| || ||||| || ||||| | | || || || |||
Sbjct 513 TGACATTAGTGGTAACCATGTCGGAATCAACATCAACTC-GATGACTTCTCTTGTCGCTG 571
Query 542 AGAAAGCTGGTTATTGGGTTCAGACA--AGAACTGGAGGAAACAATCAA-T--GGTTGTT 596
|||||||||||||||||||||||||| || | ||| ||| || || | ||| |||
Sbjct 572 AGAAAGCTGGTTATTGGGTTCAGACATTAGT-C-GGAA-AAAGAA--AAGTTTGGTCGTT 626
Query 597 TAAGGAAGTGAAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCGAGTACAAGAA-CA 655
||| || ||||| ||||| || ||||| | | ||| ||||||||||||| || ||| ||
Sbjct 627 TAAAGATGTGAATCTTAGCAGTGGAGAGAGGTTCAAGGCTTGGATCGAGTTCA-GAAGCA 685
Query 656 --G--TAAAGTCATTGT-TTGGC-TCGCACCTGCCCAT-TTAAAGAAACCGAAGAGGCCA 708
| | || || || | |||| |||| | |||| |||||||||||||||
Sbjct 686 AAGACTCTAGGAATACCATTACCATCGCCCCTGAAAACGTTAA-GAAACCGAAGAGGCCT 744
Query 709 TTGATCGAAACA-C-A-AGTTGATCTCTCTGAGGTGGTTCTTGAAA-CAATGTATACTGG 764
|||||| || | | ||| | ||| ||| || ||||| ||| || |||| ||||
Sbjct 745 TTGATCCAAGGTTCGAGAGT--A-CTCAATGATGTTCTTCTTCAAAACA-TGTACGCTGG 800
Query 765 TTTTGCTGGTTCGATGGGTCGTGGCA-TCGAGCGTCACGACATTTGGAGCTGG 816
|||||||||||| ||||| |||| | | ||||||||||| |||||||||||
Sbjct 801 TTTTGCTGGTTCCATGGGACGTGCCGGT-GAGCGTCACGATGTTTGGAGCTGG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5