BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474482
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily pro... 802 0.0
AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein ... 542 2e-153
> AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:19980462-19981109 FORWARD LENGTH=648
Length=648
Score = 802 bits (434), Expect = 0.0
Identities = 533/581 (92%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 1 AAACAGAGCTATCGC-AA-A-TAGTAACCACAAGAGGAAGTGAAACGATGTCTCTAATTC 57
||||||||| | ||| || | ||| || ||||||||||||||||||||||||||||||||
Sbjct 2 AAACAGAGCAAACGCAAAGAGTAGCAATCACAAGAGGAAGTGAAACGATGTCTCTAATTC 61
Query 58 CAAGCATCTTCGGAGGAAGAAGAACGAACGTTTTCGATCCATTCTCTCTAGACGTATGGG 117
||||||||||||||||||||||||| |||||||||||||| ||||| || || || | |
Sbjct 62 CAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCGATCCGTTCTCGCTGGATGTTTTCG 121
Query 118 ATCCATTCGAAGGATTCTTGACGCCGTCAGGATTGGCAAACGCACCGGCTAAGGATGTGG 177
|||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 122 ATCCGTTCGAAGGTTTCTTGACGCCGTCAGGATTGGCAAACGCACCCGCTATGGATGTGG 181
Query 178 CAGCGTTCACAAACGCTAAAGTTGATTGGAAGGAGACACCTGAGGCGCACGTGTTCAAGG 237
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 182 CAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAGACACCTGAGGCGCACGTGTTCAAGG 241
Query 238 CGGACTTACCGGGGCTAAAGAAAGAAGAGGTGAAGGTGGAGGTTGAAGATGGCAACATCC 297
|||| |||||||| || | ||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 242 CGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAAGTGGAGGTTGAGGATGGCAACATAC 301
Query 298 TTCAGATAAGCGGAGAGAGGAGCAATGAGAATGAAGAGAAGAATGACAAGTGGCACCGTG 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAAGAGAAGAATGACAAGTGGCACCGTG 361
Query 358 TGGAGCGGTCTAGTGGGAAGTTCATGAGGAGGTTTAAGCTACCGGAGAATGCTAAGATGG 417
|||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 362 TGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTTAGGCTGCCGGAGAATGCTAAGATGG 421
Query 418 AAGAAATCAAGGCCAGTATGGAGAATGGTGTGTTGTCTGTTACCGTGCCTAAAGTGCCAG 477
| |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 422 AGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGGTGCCAG 481
Query 478 AGAAGAAGCCTGAGGTTAAGTCCATTGATATCTCCGGTTAAAGGTGAAT-GTTTAAGACC 536
|||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 482 AGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCTGGTTAAAGG-GAATTGTTTAAGACC 540
Query 537 AAAAAATGTGTGATTGTAGTGAAATAATTGGTGTGTGTTGT 577
||||| |||||||| |||||||||||||||||||||| |||
Sbjct 541 AAAAA-TGTGTGATGGTAGTGAAATAATTGGTGTGTGATGT 580
> AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein
17.4 | chr3:16984118-16984841 REVERSE LENGTH=724
Length=724
Score = 542 bits (293), Expect = 2e-153
Identities = 430/496 (87%), Gaps = 10/496 (2%)
Strand=Plus/Plus
Query 30 AGAGGAAGTGAAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACGAACGTT 89
|||| ||| ||||||||||||||| |||| ||| | || ||||| ||||||| |||||
Sbjct 94 AGAGTAAGCGAAACGATGTCTCTAGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTG 153
Query 90 TTCGATCCATTCTCTCTAGACGTATGGGATCCATTCGAAGGATTCTTGACGCCGTCAGGA 149
||||| ||||| || ||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 154 TTCGACCCATTTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACGCC--C-GGG 210
Query 150 TTGGCAAACGCACCGGCTAAGGATGTGGCAGCGTTCACAAACGCTAAAGTTGATTGGAAG 209
||| |||||||||| || ||||| |||||||||||||||||||||||||| || |||| |
Sbjct 211 TTGACAAACGCACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGG 270
Query 210 GAGACACCTGAGGCGCACGTGTTCAAGGCGGACTTACCGGGGCTAAAGAAAGAAGAGGTG 269
||||||||||| ||||| ||||||||||||||| | || ||||| ||||| |||||||||
Sbjct 271 GAGACACCTGAAGCGCATGTGTTCAAGGCGGACGTGCCTGGGCTTAAGAAGGAAGAGGTG 330
Query 270 AAGGTGGAGGTTGAAGATGGCAACATCCTTCAGATAAGCGGAGAGAGGAGCAATGAGAAT 329
|||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||
Sbjct 331 AAGGTGGAGGTTGAAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAAT 390
Query 330 GAAGAGAAGAATGACA-AGTGGCACCGTGTGGAGCGGTCTAGTGGGAAGTTCATGAGGAG 388
|||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 391 GAAGAGAAGAGTGACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAG 449
Query 389 GTTTAAGCTACCGGAGAATGCTAAGATGGAAGAAATCAAGGCCAGTATGGAGAATGGTGT 448
|||| | | || |||||||| ||| |||| ||| | ||||| |||||||||||||| ||
Sbjct 450 GTTTCGGTTGCCAGAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGT 509
Query 449 GTTGTCTGTTACCGTGCCTAAAGTGCCAG-AGAAG-AAGCCTGAGGTTAAGTCCATTGAT 506
|||||| ||||| ||||| ||||| | || ||| | ||||| ||||| |||||| |||||
Sbjct 510 GTTGTCGGTTACGGTGCCGAAAGTTC-AGGAGA-GTAAGCCGGAGGTCAAGTCCGTTGAT 567
Query 507 ATCTCCGGTTAA-AGG 521
||||| |||||| |||
Sbjct 568 ATCTCTGGTTAAGAGG 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5