BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474484
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53560.1 | Symbols: | Ribosomal protein L18ae family | chr1... 821 0.0
> AT1G53560.1 | Symbols: | Ribosomal protein L18ae family | chr1:19984742-19985983
REVERSE LENGTH=651
Length=651
Score = 821 bits (444), Expect = 0.0
Identities = 502/530 (95%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 1 agagagagagagagaCATAATGGGAAAAGAAAAAGACAAAAACAGAGGAGCTTCTCCTCC 60
||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 5 AGAGATAGAGAGAGAGATAATGGGCAAAGAAAAAGACAAAAACAGAGGAGCTTCTCCTTC 64
Query 61 ATCTTACGGCACGTTTCAAGGTGTCCCTACTTATCCTCCACCGTCGTATCCTCATCCTCC 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 65 ATCTTACGGCACGTTTCAAGGTGTCCCTACTTATCCTCCACCGTCCTATCCTCATCCTCC 124
Query 121 GTCGCATCATCCAGTCATCAGATTTCCTCAGCCGTCTCCACCTCCCGGAACATCTCATCA 180
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 125 GTCGCATCATCCAGTCATCGGAATTCCTCAGCCGTCTCCACCTCCCGGATCACCTCATCA 184
Query 181 CAACATTTCCGTTCATCAATACATCCAAGAACATCAAACCGTTCCTGGTTACCCTGTTTC 240
| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 185 CGACATTTCCGTTCATCAATACATTCAAGAACATCAAACCGTTGCTGGTTACCCTGTTTC 244
Query 241 TGAAGGAAGACCTGCAAGACAAAACCGTCTTCCTTGTTGTGGTCTTGGCCTCGGTTGGTT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCAAGGAAGACCTGCAAGACAAAACCGTCTTCCTTGTTGTGGTCTTGGCCTCGGTTGGTT 304
Query 301 CTTGTTCATCATTGGTTTCCTCCTTGGTGCAATCCCATGGTACATAGGCGTATTCATTCT 360
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 305 CTTGTTCATCATTGGTTTCCTCCTTGGTGCAATTCCATGGTATGTAGGCGTATTCATTCT 364
Query 361 AGTATGTGCTAGGATCGATACGA-GAGAGAAACCAGGATACATAGCTTGCACCATTGCAG 419
||||||||||||||||||| | | ||||||||||||||||| ||||||| ||||||||||
Sbjct 365 AGTATGTGCTAGGATCGATCC-ACGAGAGAAACCAGGATACGTAGCTTGTACCATTGCAG 423
Query 420 CTGTTGTTGCTACAATTGCCATAGTTTTTGGTGTCATGGGAGGAAGAGGAGCCTGGTCGT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 CTGTTGTTGCTACAATTACCATAGTTTTTGGTGTCATGGGAGGAAGAGGAGTTTGGTCGT 483
Query 480 GAAGTGTGCAAATTAAGACATTGTTCATCAAGTATCTTGAA-TGTGTATA 528
||||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct 484 GAAGTGTGCAAATAAATACATTGTTCATCAAGTATCTTGAACT-TGTATA 532
Score = 106 bits (57), Expect = 3e-22
Identities = 73/80 (91%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 519 AATGTGTAT-ATTTAAGTGT--GTGTGCTTGATGATTTAAGTGTGCAAATAAATACATTC 575
|||| | || |||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 556 AATGGGGATGATTTAAGTGTGGGAGTGCTTGTTGATTTAAGTGTGCAAATAAATACATTC 615
Query 576 TTCATCAAGTATCTTGAGCT 595
||||||||||||||||||||
Sbjct 616 TTCATCAAGTATCTTGAGCT 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5