BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474571

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   785    0.0  


> AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G19530.1); 
Has 63 Blast hits to 63 proteins in 14 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:20578406-20580010 FORWARD LENGTH=919
Length=919

 Score =  785 bits (425),  Expect = 0.0
 Identities = 481/508 (95%), Gaps = 4/508 (1%)
 Strand=Plus/Plus

Query  265  GTTATCTTTTCTTTAGAACTAAGAAAAAGGACATAGATCCTCCTCTAAACGAAGAGATAG  324
            ||||||| |||||||||||||||||||||||| ||||   |||| ||   |||||||  |
Sbjct  405  GTTATCTGTTCTTTAGAACTAAGAAAAAGGACCTAGA---TCCTGTAGTTGAAGAGACGG  461

Query  325  CTGCTAAATCGAGTTCAGTGGCAGCTCCTGTTAGTGTGGAAAAAACTGTGTCTTCTACAG  384
            ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||
Sbjct  462  CTGCTAAATCGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACAG  521

Query  385  TGGTTGCAGAGCCAGTGGTGGTCAAGGCACGTGAGCCAATTCCAGAGAAACAACAACGTG  444
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct  522  TGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGTG  581

Query  445  AGCTCTTCAAATGGATGTTGGAGGagaaaaggaaagtaaatccgaaaaacgcagaagaga  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  582  AGCTCTTCAAATGGATGTTGGAGGAGAAAAGGAAAGTAAATCCGAAAAACGCAGAAGAGA  641

Query  505  agaaacggaatgacgaagagaaagCGATTCTGAAACAGTTCATAGGCTCCAAAACCATTC  564
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  642  AGAAACGGAATGACGAAGAGAAAGCGATTCTCAAACAGTTCATCGGCTCCAAAACCATTC  701

Query  565  CTACTTTCTGATTTATTAAAGTGCAGATTCTGTTGA-TTTTAGTTTGGTTTCAGTTCTTA  623
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  702  CTACTTTCTGATTCATTAAAGTGCAGATTCTGTTGATTTTTAGTTTGGTTTCACTTCTTA  761

Query  624  CTTTGTGGATATCAGATGTTTTGCTTTTGGAAACTTTTTTCGTTTCATTGTTGAAACCAG  683
            |||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||
Sbjct  762  CTTTGTGGATATCACATGTTTTGCTTTTGGAAAAATTGTTCGTTTCATTGTTGAAACCAG  821

Query  684  TCACTTTGGTATCTTCAGTTCCAACATTGATCCATTGTCCGGTCTTGTGTTTCTGTGGCA  743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  822  TCACTTTGGTATCTTCAGTTCCAACATTGATCCATTGTCCGGTCTTGTGTTTCTGTGTCA  881

Query  744  TTGTGAAACGTTGAATGCTAGAGAAAAA  771
            ||||||||||||||||||||||||||||
Sbjct  882  TTGTGAAACGTTGAATGCTAGAGAAAAA  909


 Score =  453 bits (245),  Expect = 1e-126
 Identities = 270/282 (96%), Gaps = 2/282 (1%)
 Strand=Plus/Plus

Query  2    CGCCATGAGTGAACAAACTCCGAAGCTTTTCACCAATAAACCCAAGAAGAAGGCCATTAT  61
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   CGCCATGAGTGAAGAAACTCCGAAGCTTTTCACCAATAAACCCAAGAAGAAGGCCATTAT  126

Query  62   CGCTCAGCTTAAGCACGTTGAAGCCAATTTCAACAATCCCACCGTTCCTCCATCATCAAA  121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  127  CGCTCAGCTTAAGCACGTTGAAGCCAATTTCAACAATCCCACCGTTCCTCCATCATCTAA  186

Query  122  ACCGTCTCCGGCTGCAGCAGCCGCGGCTTCGTATACTATGGGTGGTGGTTCTGTTCCTCC  181
            ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  187  ACCGTCTCCAGCTGCAGCAGCGGCGGCTTCGTATACGATGGGTGGTGGTTCTGTTCCTCC  246

Query  182  TCCGCCTCCTCCTAAGGAATCATTCGCTCGGAGGTACAAATATGTCTGGCCGCTCCTCCT  241
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  247  TCCGCCTCCTCCTAAGGAATCATTCGCTCGTAGGTACAAATATGTCTGGCCGCTTCTCCT  306

Query  242  TACCGTCAATCTCGCCGTCGGAGG-TTAT-CTTTTCTTTAGA  281
            |||||||||||||||||||||||| || | ||  ||||||||
Sbjct  307  TACCGTCAATCTCGCCGTCGGAGGATTTTGCTCATCTTTAGA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37474673662


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5