BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474572 Length=1154 Score E Sequences producing significant alignments: (Bits) Value AT1G55170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1653 0.0 > AT1G55170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). | chr1:20580274-20581975 FORWARD LENGTH=1219 Length=1219 Score = 1653 bits (895), Expect = 0.0 Identities = 1097/1187 (92%), Gaps = 44/1187 (4%) Strand=Plus/Plus Query 1 CAATTCAAGGTAGAAGACGATATCCGCTCTGTGTAGCAGAACAGAAGAAAAGGTAATTCT 60 ||||||||||||||||||||||||||||| || | || ||||||||||||||||||| Sbjct 44 CAATTCAAGGTAGAAGACGATATCCGCTC--TG-A--AG--CAGAAGAAAAGGTAATTCT 96 Query 61 GAATGTCTGGAAGAAACCGGATT--C------A-CCGAGAAAGTTATCATGATCGGCGTG 111 ||||||||||||||||||||||| | | |||||| || |||||||||| |||| Sbjct 97 GAATGTCTGGAAGAAACCGGATTCACAGAGATATCCGAGACAGCTATCATGATCATCGTG 156 Query 112 AATTACCACCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 171 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 ATTTACCTCCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 216 Query 172 CTTTGTTAGAAGATC-T----T-C---A----G--AT----A--CAGGATGCTGAAATTA 210 ||||||||||||||| | | | | | || | |||||||||||||| | Sbjct 217 CTTTGTTAGAAGATCTTCAGATACAGGAGGGTGAAATCAGAAGGCAGGATGCTGAAATCA 276 Query 211 GAAGGCTTTTGAATGATAATCATAGACTAGCTGACGACCGAGTGGTTCTGGAGCGAGAAC 270 |||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 277 GAAGGCTTTTGAGTGATAATCATGGACTAGCTGACGACCGAATGGTTCTGGAGAGAGAAC 336 Query 271 TCGGTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 330 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 TCGTTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 396 Query 331 AGCAAGATCTGCAGTCGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 390 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 397 AGCAAGATCTGCAATTGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 456 Query 391 GCGCTATGGAGTCGTATAAGAAGGAGGCGTCGCAGTTGCGTGGTGAAGTTCAGAAGCTGA 450 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 457 GCGCTATGGAGTCGTATAAGAAGGAGGCTTCACAGTTGCGTGGTGAAGTTCAGAAGCTGG 516 Query 451 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGATGCTTAGGAAAGATTTGGCGAAAT 510 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 517 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGTTGCTTAGGAAAGATTTGGCTAAAT 576 Query 511 TGCAATCAGATAACAAGCAGATTCCGGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 570 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 577 TGCAATCAGATAACAAGCAGATTCCTGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 636 Query 571 AGCTTATGCATGCTAGAGATGCAATTGACTATGAAAAGAAGGAAAAGTTTGAGCTTATGG 630 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 637 AGCTTATGCATGCTAGAGATGCAATTGAATATGAGAAGAAGGAAAAGTTTGAGCTTATGG 696 Query 631 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCCCGTGAAGTTGAAAAGCTAC 690 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 697 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCGCGTGAAGTTGAAAAGCTAC 756 Query 691 GAGCAGAACTTGCTACTGTTGATAGTAGGCCCTGGGGTTTTGGTGGATCGTATGGGATGA 750 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 757 GCGCAGAACTTGCTACTGTTGATAGTAGGCCGTGGGGTTTTGGTGGATCGTATGGGATGA 816 Query 751 ATTACAACAATATGGATGGCACTTTCCGTGGTTCTTATGGCGAAAACGATAGTTATTTGG 810 |||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||| Sbjct 817 ATTACAACAATATGGACGGCACTTTCCGTGGCTCGTATGGCGAAAACGATACTTATTTGG 876 Query 811 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 936 Query 871 TGGATCGTCATTGAAATCTATAAATGATCTGTGGAAAAAGAATGAGGTGACGTCTAAATA 930 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 937 TGGATCGTCATTGAAATCTA-AAATGATCTGTGGAAAAAGAATGAGGTGACGACTAAATA 995 Query 931 GCCCACTTCGCAAAA-TCCTCTGGTTTTTTGTGGGTATGCATCTACTCTAAATCTAAATG 989 ||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 996 GCCCACTTCTCAATACTCCTCTGGTTGTTTGTGGGTATGCATCTACTCTAAATCTAAATG 1055 Query 990 TTAGTTCTTCTGCTTTCTCAATAAAGCGTAATAGTTGTGTAACTTAGATGGCtttttatt 1049 |||||||||||||||| | ||||| |||| |||||| |||||||||||||||||||| || Sbjct 1056 TTAGTTCTTCTGCTTTTTTAATAAGGCGTTATAGTTATGTAACTTAGATGGCTTTTT-TT 1114 Query 1050 cttt-tct-tttttAGCCAAACCTAGATGGCTAATCTATTTCCTTCTTATTTCAATAATT 1107 |||| | | ||||||||||| | ||||||||||||||||||| | | ||||||||||| Sbjct 1115 CTTTCTTTCTTTTTAGCCAAGCTTAGATGGCTAATCTATTTCGTA-TG-TTTCAATAATT 1172 Query 1108 TGACGATTTGGTTCTTCTTGCTTGCTATTAGTTGTGTCCTATTATCC 1154 |||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1173 TGACGATTTGGTTCTTCTTGCTTGCTATTAATTGTGTTCTATTATCC 1219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56626214760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5