BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474578
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55210.1 | Symbols: | Disease resistance-responsive (dirige... 1171 0.0
AT3G13660.1 | Symbols: | Disease resistance-responsive (dirige... 267 2e-70
> AT1G55210.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:20597869-20598708 REVERSE
LENGTH=840
Length=840
Score = 1171 bits (634), Expect = 0.0
Identities = 769/832 (92%), Gaps = 17/832 (2%)
Strand=Plus/Plus
Query 1 CACACCTTCTTGTTCTCTACACCTTTTATATAAACAAACCATCCATAGTAACCAAAACCA 60
|||||| |||||| |||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 18 CACACCACCTTGTTTTCTACACCACTTATGTAAACAAACCAACCATAGTAACCAAAACCA 77
Query 61 CAACAAAACACATGGCTAAGCTCATTTTCTTCCTCGCCGTCCAAATCCTCCTCCTCGCCG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 78 CAACAAAACACATGGCTAAGCTCATTTTCTTCCTCGCCGTCCAAATCCTCTTTCTCGCCG 137
Query 121 TGGTTTCTTCTGCCGGAGATGGCGAAGACTTCTTTAGAACCATGGATCGGAAACTTCTTG 180
|||||||||| |||||||| || ||||||||| |||||||||||| |||||||||||||
Sbjct 138 TGGTTTCTTCCGCCGGAGACGGTGAAGACTTCGCTAGAACCATGGACCGGAAACTTCTTG 197
Query 181 GTCTCCACAAAAAGGAGAAACTAACCCATTTCAAAGTCTATTGGCACGACATCTTAAGCG 240
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 198 GTCTCCACAAAAAGGAGAAACTTACCCATTTCAAAGTCTATTGGCACGATATCTTAAGCG 257
Query 241 GTCCGAACCCAACCTCCATCATGATCCAGCCACCGGTTACAAACACTTCATACTTTGGAG 300
||||||||||||||||||||||||| || |||||||||||||||| ||| || |||||||
Sbjct 258 GTCCGAACCCAACCTCCATCATGATACAACCACCGGTTACAAACAGTTCCTATTTTGGAG 317
Query 301 CTATCTCCATGATCGACAACGCTTTGACGGCCAAGGTTCCGTTGAACTCCACGGTGTTGG 360
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 318 CCATCTCCATGATCGACAACGCTTTGACGGCCAAAGTTCCGATGAACTCCACGGTGTTGG 377
Query 361 GCCAAGCCCAAGGGTTTTACGCCGGAGCGGCCCAAAAGGAGTTGGGTTTTCTGATGGCGA 420
| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 378 GTCAGGCCCAAGGATTTTACGCCGGAGCGGCCCAAAAGGAGTTGGGTTTCCTGATGGCGA 437
Query 421 TGAACTTTGCTTTTAAGACAGGGAAATATAACGGAAGTACGATCACGATTCTTGGTAGGA 480
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 438 TGAACTTTGCTTTCAAGACAGGGAAATATAACGGAAGCACGATCACGATTCTTGGCAGGA 497
Query 481 ACACGGCGTTGTCAGAAGTCAGAGAAATGCCGATCGTCGGAGGAAGTGGGCTTTTCCGAT 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ACACGGCGTTGTCGGAAGTCAGAGAAATGCCGATCGTCGGAGGAAGTGGGCTTTTCCGAT 557
Query 541 TTGCTAGAGGGTATGTTGAGGCTAGGACAAAGTGGGTTAATCTCAAGAACCTTGATGCTA 600
|||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct 558 TTGCTAGAGGCTATGTGGAGGCTAGGACAAAGTGGATTAATCTCAAGAACGGTGATGCTA 617
Query 601 CTGTTGAGTATAGTTGTTACGTGTTGCATTATTGAGGTTAAT-AAT-AT-TTTT-GTCGT 656
|||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||| |
Sbjct 618 CTGTTGAGTATAGTTGTTACGTGTTGCATTATTGAGGTTAATTAATGATATTTTTGTC-T 676
Query 657 TTTTCTATATTTAATTTGACTACGCAATAATTAATGAATAAAACGGGATTTCAATCTATT 716
|| |||||||||||||||||||||||||||||||| || || | | |||||||||||||
Sbjct 677 TTCTCTATATTTAATTTGACTACGCAATAATTAAT-AA-AACA-G--ATTTCAATCTATT 731
Query 717 GAGTTTTCTTAGTTCttttttttttGCATTTGGTTTTATGGTGTGTGTGGTGGACGTTGT 776
||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 732 GAGTTTTCTTAACT-TTTTTTTTTTGCATTTGGTTTAATGGTGTGTGTGGTGGACGTTGT 790
Query 777 GTGGGAAGT-GATTGTAGTTTAT-AA-TTTATAA-AAATTATCTAGTTTTTT 824
| |||| || | ||||| ||||| || ||||||| |||| ||||||||||||
Sbjct 791 GCGGGA-GTTGTTTGTACTTTATTAAATTTATAATAAAT-ATCTAGTTTTTT 840
> AT3G13660.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:4464908-4465586 FORWARD
LENGTH=679
Length=679
Score = 267 bits (144), Expect = 2e-70
Identities = 370/475 (78%), Gaps = 32/475 (7%)
Strand=Plus/Plus
Query 180 GGTCTCCACAAAAAGGAGAAACTAACCCATTTCAAAGTCTATTGGCACGACATCTTAAGC 239
||| ||||||| ||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 144 GGT-TCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGC 202
Query 240 GGTCCGAACCCAA-C--CT-CCATCATGATCCAGCCAC-CGGTTACAAACACTTCATAC- 293
|||| ||||| | | || |||||||||| ||| | ||||| ||||| | ||| ||
Sbjct 203 GGTCAAAACCCTAGCTACTGCCATCATGATTCAGA-AGGCGGTTTCAAACTCCTCA-ACC 260
Query 294 T--TT-GGAGCTATCTCCATGATCG-ACAACGCTTTGACGGCCAAGGTTCC-GTTGAACT 348
| || ||| | ||| | |||| || ||||||| | || | | || || ||| ||||
Sbjct 261 TCCTTCGGATCAATCACAATGA-CGGACAACGCACTAACATCTGATGTGCCCGTT-AACT 318
Query 349 CCACGGTGTTGGGCCAAG-CCCAAGGGTTTTACGCCGGAGCGGCCCAAAAG-GAGTTGGG 406
| || ||| | ||||| | ||||||| |||||||| |||||||||||| | ||| | ||
Sbjct 319 CGACTGTGGTAGGCCA-GTCCCAAGGTTTTTACGCTGGAGCGGCCCAAC-GTGAGCTAGG 376
Query 407 TTTTCT-GATGGCGATGAACTTT-GCTTTTAAGACAGGGAAATATAACGGAAGTACGATC 464
|| || |||||||||||| ||| ||||| || |||||||| || || || |||||||||
Sbjct 377 CTT-CTTGATGGCGATGAA-TTTCGCTTTCAAAACAGGGAAGTACAATGGGAGTACGATC 434
Query 465 ACGATTCTTGGTAGGAACACGGCGTTGTCAGAAG-TCAGAGAAATGCCGATCGTCGGAGG 523
|| |||||||| ||||||||| ||| || |||| | || |||||| || | ||||||||
Sbjct 435 ACAATTCTTGGCCGGAACACGGTGTTCTC-GAAGGTTAGGGAAATGACGGTGGTCGGAGG 493
Query 524 AAGTGGGCTTTTCCGATTTGCTAGAGGGTATGTTGAGGCTAGGACAAAGTGGGTTA-ATC 582
|||||| | ||||| || |||||||| ||||| ||||||||||| |||||| || |||
Sbjct 494 AAGTGGAATCTTCCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGG-TTCGATC 552
Query 583 -TCAAGA-ACCTTGATGCTACTGTTGAGTATAGTTGTTACGTGTTGCATTATTGA 635
| |||| | || || |||||||| || | |||||| || |||||||| |||
Sbjct 553 CT-AAGACAGGA-GACGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5